Variant report

Variant	rs1862519
Chromosome Location	chr5:75375297-75375298
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10038280	0.89[EUR][1000 genomes]
rs10038757	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10043369	0.82[CEU][hapmap];0.87[JPT][hapmap];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10050813	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10051950	0.94[CEU][hapmap];0.91[CHB][hapmap];0.87[JPT][hapmap];1.00[YRI][hapmap]
rs10054931	0.82[CEU][hapmap];0.87[JPT][hapmap];0.83[YRI][hapmap];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10060618	0.82[CEU][hapmap]
rs10063621	0.82[CEU][hapmap];0.86[JPT][hapmap];0.92[EUR][1000 genomes]
rs10064145	0.83[CEU][hapmap];0.83[CHB][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs10065114	0.82[CEU][hapmap];0.82[CHB][hapmap];0.95[JPT][hapmap];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10067484	0.94[CEU][hapmap];0.90[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap]
rs10074384	0.94[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap]
rs10474460	0.89[EUR][1000 genomes]
rs12513411	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12513447	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12656979	0.81[AFR][1000 genomes];0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12659929	0.81[ASN][1000 genomes]
rs12697846	0.93[CEU][hapmap];0.94[CHB][hapmap];0.84[JPT][hapmap];1.00[YRI][hapmap]
rs1553311	0.81[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs17673786	0.82[CEU][hapmap];0.91[CHB][hapmap];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs17746749	0.83[CEU][hapmap];0.91[EUR][1000 genomes]
rs1862520	0.83[CEU][hapmap];0.96[JPT][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28554027	0.95[EUR][1000 genomes]
rs6453199	0.87[CHB][hapmap];0.87[JPT][hapmap];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7448740	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs767590	0.91[EUR][1000 genomes]
rs7700761	0.94[CEU][hapmap];0.87[CHB][hapmap];0.92[EUR][1000 genomes]
rs7702044	0.88[CEU][hapmap];0.86[CHB][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7711218	0.89[AFR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7712198	0.88[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7725280	0.82[CEU][hapmap];0.91[CHB][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs9293665	0.88[CEU][hapmap];0.87[CHB][hapmap];0.87[JPT][hapmap]
rs9293666	0.87[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs9293667	0.83[CEU][hapmap];0.82[CHB][hapmap];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027368	chr5:74759999-75663712	Active TSS Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv518475	chr5:74863041-75411804	Strong transcription Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	nsv869885	chr5:75365786-75419656	Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1033350	chr5:75367809-75538460	Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links