Variant report

Variant	rs28560056
Chromosome Location	chr4:119993039-119993040
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10002998	0.99[EUR][1000 genomes]
rs1058449	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17050108	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17265233	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17330453	0.89[ASN][1000 genomes]
rs28493971	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28495816	0.96[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28609814	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28698789	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28744401	0.94[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62326862	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62328680	1.00[ASN][1000 genomes]
rs62328681	1.00[ASN][1000 genomes]
rs62328710	1.00[ASN][1000 genomes]
rs62328715	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62328716	1.00[ASN][1000 genomes]
rs62328720	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916641	chr4:119780023-120777320	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
2	nsv948802	chr4:119844269-120208926	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:119967400-119994000	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr4:119975800-119994000	Weak transcription	Right Ventricle	heart
3	chr4:119975800-120003000	Weak transcription	Left Ventricle	heart
4	chr4:119979200-119996400	Weak transcription	Aorta	Aorta
5	chr4:119980600-119994000	Weak transcription	Stomach Smooth Muscle	stomach
6	chr4:119990400-119994200	Weak transcription	Colon Smooth Muscle	Colon
7	chr4:119992600-119999800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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