Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:119973763..119975718-chr4:120117214..120120157,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10002998	0.92[CEU][hapmap]
rs10021107	0.92[CEU][hapmap]
rs1047894	0.92[CEU][hapmap]
rs1058449	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17050108	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs17050116	0.92[CEU][hapmap]
rs17265233	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs28493971	0.89[ASN][1000 genomes]
rs28495816	0.89[ASN][1000 genomes]
rs28560056	0.89[ASN][1000 genomes]
rs28609814	0.89[ASN][1000 genomes]
rs28698789	0.89[ASN][1000 genomes]
rs28744401	0.89[ASN][1000 genomes]
rs3756153	0.92[CEU][hapmap]
rs62328680	0.88[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs62328681	0.86[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs62328710	0.86[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs62328715	0.92[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs62328716	0.86[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs62328720	0.89[ASN][1000 genomes]
rs9998313	0.92[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916641	chr4:119780023-120777320	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
2	nsv948802	chr4:119844269-120208926	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:119964000-119980400	Weak transcription	Fetal Stomach	stomach
2	chr4:119967400-119994000	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr4:119967800-119975200	Weak transcription	Pancreas	Pancrea
4	chr4:119967800-119977400	Weak transcription	Gastric	stomach
5	chr4:119970400-119978600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr4:119970400-119981400	Weak transcription	Ovary	ovary
7	chr4:119971000-119989600	Weak transcription	Colon Smooth Muscle	Colon
8	chr4:119972000-119976200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr4:119973200-119974400	Enhancers	Fetal Heart	heart
10	chr4:119973200-119974400	Enhancers	Psoas Muscle	Psoas
11	chr4:119973200-119975600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr4:119973600-119974400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr4:119973600-119975200	Weak transcription	Right Ventricle	heart
14	chr4:119973800-119975200	Weak transcription	Left Ventricle	heart
15	chr4:119973800-119978200	Weak transcription	Aorta	Aorta
16	chr4:119973800-119978800	Weak transcription	Stomach Smooth Muscle	stomach
17	chr4:119974000-119974800	Enhancers	Skeletal Muscle Male	skeletal muscle
18	chr4:119974200-119974400	Enhancers	Skeletal Muscle Female	skeletal muscle
19	chr4:119974200-119974600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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