Variant report

Variant	rs28563099
Chromosome Location	chr4:128117400-128117401
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10005229	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10009211	1.00[AMR][1000 genomes]
rs10015247	1.00[AMR][1000 genomes]
rs10518519	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1443063	1.00[AMR][1000 genomes]
rs17012201	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17012276	1.00[AMR][1000 genomes]
rs17012296	1.00[AMR][1000 genomes]
rs28404304	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28623758	1.00[AMR][1000 genomes]
rs28624876	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28715385	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28716200	1.00[AMR][1000 genomes]
rs55731400	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73846470	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7659466	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7693966	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9995695	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879914	chr4:128005362-128123638	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:128116800-128118000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr4:128117000-128117800	Weak transcription	Gastric	stomach
3	chr4:128117000-128118600	Enhancers	Fetal Stomach	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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