Variant report

Variant	rs28716200
Chromosome Location	chr4:128172550-128172551
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10005229	1.00[AMR][1000 genomes]
rs10009211	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10015247	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10021245	0.82[AFR][1000 genomes]
rs10518519	1.00[AMR][1000 genomes]
rs1443063	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1443170	0.81[AFR][1000 genomes]
rs17012201	1.00[AMR][1000 genomes]
rs17012276	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17012296	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17012380	0.91[AFR][1000 genomes]
rs28404304	1.00[AMR][1000 genomes]
rs28563099	1.00[AMR][1000 genomes]
rs28623758	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28624876	1.00[AMR][1000 genomes]
rs28715385	1.00[AMR][1000 genomes]
rs55731400	1.00[AMR][1000 genomes]
rs727292	0.81[AFR][1000 genomes]
rs73846470	1.00[AMR][1000 genomes]
rs7659466	1.00[AMR][1000 genomes]
rs7693966	1.00[AMR][1000 genomes]
rs9995695	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031024	chr4:128152969-128264539	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv879915	chr4:128167093-129150590	Strong transcription Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:128170000-128172800	Enhancers	HMEC	breast
2	chr4:128172000-128172600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr4:128172200-128173000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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