Variant report

Variant	rs28570342
Chromosome Location	chr5:15368611-15368612
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10045262	1.00[AMR][1000 genomes]
rs10053676	1.00[AMR][1000 genomes]
rs10060027	1.00[AMR][1000 genomes]
rs10063263	0.83[AMR][1000 genomes]
rs10069407	1.00[AMR][1000 genomes]
rs10475048	1.00[AMR][1000 genomes]
rs13358244	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13359958	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1447279	1.00[AMR][1000 genomes]
rs16903856	1.00[AMR][1000 genomes]
rs16903858	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28503726	1.00[AMR][1000 genomes]
rs28536119	1.00[AMR][1000 genomes]
rs28710989	1.00[AMR][1000 genomes]
rs28713425	0.83[AMR][1000 genomes]
rs4701628	0.83[AMR][1000 genomes]
rs7710669	1.00[AMR][1000 genomes]
rs7736609	1.00[AMR][1000 genomes]
rs9312883	1.00[AMR][1000 genomes]
rs9312884	0.83[AMR][1000 genomes]
rs9312885	1.00[AMR][1000 genomes]
rs9312886	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv516929	chr5:15087791-15870300	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1023068	chr5:15095221-15863583	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv869040	chr5:15097602-15866117	Active TSS Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv530222	chr5:15151662-15851485	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv881558	chr5:15291398-15420775	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:15363600-15368800	Enhancers	Fetal Heart	heart
2	chr5:15364800-15371400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr5:15367200-15368800	Enhancers	Right Atrium	heart
4	chr5:15367200-15369200	Enhancers	Left Ventricle	heart
5	chr5:15367200-15374000	Weak transcription	Aorta	Aorta
6	chr5:15367600-15369200	Enhancers	HUVEC	blood vessel
7	chr5:15367600-15370600	Weak transcription	Colon Smooth Muscle	Colon
8	chr5:15367800-15376600	Weak transcription	Fetal Lung	lung
9	chr5:15368600-15371200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr5:15368600-15371400	Weak transcription	Fetal Muscle Leg	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links