Variant report

Variant	rs10063263
Chromosome Location	chr5:15354008-15354009
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10045262	0.83[AMR][1000 genomes]
rs10053676	0.83[AMR][1000 genomes]
rs10059008	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10060027	0.83[AMR][1000 genomes]
rs10069407	0.83[AMR][1000 genomes]
rs10077393	1.00[EUR][1000 genomes]
rs10475048	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs11133817	1.00[EUR][1000 genomes]
rs13356380	1.00[EUR][1000 genomes]
rs13358244	0.83[AMR][1000 genomes]
rs13359958	0.83[AMR][1000 genomes]
rs1447279	0.83[AMR][1000 genomes]
rs1529487	0.83[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs16903856	0.83[AMR][1000 genomes]
rs16903858	0.83[AMR][1000 genomes]
rs16903864	1.00[EUR][1000 genomes]
rs16903892	1.00[EUR][1000 genomes]
rs188592	1.00[EUR][1000 genomes]
rs2402164	1.00[EUR][1000 genomes]
rs28503726	0.83[AMR][1000 genomes]
rs28536119	0.83[AMR][1000 genomes]
rs28570342	0.83[AMR][1000 genomes]
rs28710989	0.83[AMR][1000 genomes]
rs28713425	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28716171	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2896211	1.00[EUR][1000 genomes]
rs304557	1.00[EUR][1000 genomes]
rs304559	1.00[EUR][1000 genomes]
rs304560	1.00[EUR][1000 genomes]
rs304561	1.00[EUR][1000 genomes]
rs304562	1.00[EUR][1000 genomes]
rs4701626	1.00[EUR][1000 genomes]
rs4701628	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4701629	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4702074	1.00[EUR][1000 genomes]
rs4702075	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4702077	1.00[EUR][1000 genomes]
rs512861	1.00[EUR][1000 genomes]
rs572051	1.00[EUR][1000 genomes]
rs575014	1.00[EUR][1000 genomes]
rs57991493	1.00[EUR][1000 genomes]
rs598853	1.00[EUR][1000 genomes]
rs609984	1.00[EUR][1000 genomes]
rs623156	1.00[EUR][1000 genomes]
rs629654	0.83[GIH][hapmap];1.00[TSI][hapmap]
rs633807	1.00[EUR][1000 genomes]
rs652985	1.00[EUR][1000 genomes]
rs6554885	1.00[EUR][1000 genomes]
rs683393	0.83[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs685706	1.00[EUR][1000 genomes]
rs73751952	1.00[EUR][1000 genomes]
rs73751955	1.00[EUR][1000 genomes]
rs7709371	1.00[EUR][1000 genomes]
rs7710669	0.83[AMR][1000 genomes]
rs7717617	1.00[EUR][1000 genomes]
rs7736609	0.83[AMR][1000 genomes]
rs9312883	0.83[AMR][1000 genomes]
rs9312884	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9312885	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs9312886	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9968651	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530221	chr5:14859687-15364470	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
2	nsv516929	chr5:15087791-15870300	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv1023068	chr5:15095221-15863583	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv869040	chr5:15097602-15866117	Active TSS Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	nsv530222	chr5:15151662-15851485	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv881558	chr5:15291398-15420775	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:15353000-15354200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr5:15353000-15354400	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr5:15353400-15354400	Enhancers	Fetal Brain Male	brain
4	chr5:15353800-15354800	Enhancers	Brain Germinal Matrix	brain
5	chr5:15353800-15355000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr5:15353800-15355000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr5:15353800-15355600	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr5:15354000-15354800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
9	chr5:15354000-15355000	Enhancers	Fetal Brain Female	brain
10	chr5:15354000-15355200	Enhancers	iPS-15b Cell Line	embryonic stem cell

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