Variant report

Variant	rs28710989
Chromosome Location	chr5:15387985-15387986
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10045262	1.00[AMR][1000 genomes]
rs10053676	1.00[AMR][1000 genomes]
rs10060027	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10063263	0.83[AMR][1000 genomes]
rs10069407	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10475048	1.00[AMR][1000 genomes]
rs13358244	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13359958	1.00[AMR][1000 genomes]
rs1447279	1.00[AMR][1000 genomes]
rs16903856	1.00[AMR][1000 genomes]
rs16903858	1.00[AMR][1000 genomes]
rs28503726	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28536119	1.00[AMR][1000 genomes]
rs28570342	1.00[AMR][1000 genomes]
rs28713425	0.83[AMR][1000 genomes]
rs28716171	0.82[AFR][1000 genomes]
rs4701628	0.83[AMR][1000 genomes]
rs7710669	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7736609	1.00[AMR][1000 genomes]
rs9312883	1.00[AMR][1000 genomes]
rs9312884	0.83[AMR][1000 genomes]
rs9312885	1.00[AMR][1000 genomes]
rs9312886	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv516929	chr5:15087791-15870300	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1023068	chr5:15095221-15863583	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv869040	chr5:15097602-15866117	Active TSS Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv530222	chr5:15151662-15851485	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv881558	chr5:15291398-15420775	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:15386400-15392400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr5:15387600-15389200	Enhancers	HepG2	liver
3	chr5:15387800-15389400	Enhancers	Fetal Stomach	stomach

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