Variant report

Variant	rs652985
Chromosome Location	chr5:15537650-15537651
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10041362	0.89[AFR][1000 genomes]
rs10059008	1.00[EUR][1000 genomes]
rs10063263	1.00[EUR][1000 genomes]
rs10077393	1.00[EUR][1000 genomes]
rs11133817	1.00[EUR][1000 genomes]
rs13356380	1.00[EUR][1000 genomes]
rs1529487	1.00[EUR][1000 genomes]
rs16903864	1.00[EUR][1000 genomes]
rs16903892	1.00[EUR][1000 genomes]
rs188592	1.00[EUR][1000 genomes]
rs2402164	1.00[EUR][1000 genomes]
rs28713425	1.00[EUR][1000 genomes]
rs28716171	1.00[EUR][1000 genomes]
rs2896211	1.00[EUR][1000 genomes]
rs304557	1.00[EUR][1000 genomes]
rs304559	1.00[EUR][1000 genomes]
rs304560	1.00[EUR][1000 genomes]
rs304561	1.00[EUR][1000 genomes]
rs304562	1.00[EUR][1000 genomes]
rs4701626	1.00[EUR][1000 genomes]
rs4701628	1.00[EUR][1000 genomes]
rs4701629	1.00[EUR][1000 genomes]
rs4702074	1.00[EUR][1000 genomes]
rs4702075	1.00[EUR][1000 genomes]
rs4702077	1.00[EUR][1000 genomes]
rs512861	1.00[EUR][1000 genomes]
rs532005	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs572051	1.00[EUR][1000 genomes]
rs575014	1.00[EUR][1000 genomes]
rs57991493	1.00[EUR][1000 genomes]
rs598853	1.00[EUR][1000 genomes]
rs609984	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs623156	1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs629654	0.93[YRI][hapmap];0.83[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs633807	0.97[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6554885	1.00[EUR][1000 genomes]
rs683393	0.96[YRI][hapmap];0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs685706	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73751952	1.00[EUR][1000 genomes]
rs73751955	1.00[EUR][1000 genomes]
rs7709371	1.00[EUR][1000 genomes]
rs7717617	1.00[EUR][1000 genomes]
rs9312884	1.00[EUR][1000 genomes]
rs9312886	1.00[EUR][1000 genomes]
rs9968651	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv516929	chr5:15087791-15870300	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1023068	chr5:15095221-15863583	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv869040	chr5:15097602-15866117	Active TSS Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv530222	chr5:15151662-15851485	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:15512200-15571200	Weak transcription	HUVEC	blood vessel
2	chr5:15518800-15547400	Weak transcription	Fetal Muscle Trunk	muscle
3	chr5:15522000-15538600	Weak transcription	Adipose Nuclei	Adipose
4	chr5:15522800-15538000	Weak transcription	Rectal Smooth Muscle	rectum
5	chr5:15523000-15537800	Weak transcription	Fetal Stomach	stomach
6	chr5:15524000-15558600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr5:15526800-15538800	Weak transcription	Psoas Muscle	Psoas
8	chr5:15527200-15538600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr5:15527400-15538600	Weak transcription	Brain Substantia Nigra	brain
10	chr5:15528000-15538400	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr5:15532200-15537800	Weak transcription	Brain Anterior Caudate	brain
12	chr5:15533800-15543600	Weak transcription	Fetal Lung	lung
13	chr5:15533800-15547400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr5:15534000-15543800	Weak transcription	Aorta	Aorta
15	chr5:15534200-15537800	Weak transcription	HSMMtube	muscle
16	chr5:15534200-15550200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr5:15534400-15540000	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr5:15534400-15550600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr5:15536400-15561400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr5:15536600-15537800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr5:15536600-15543600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr5:15536600-15547400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr5:15536800-15538200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr5:15536800-15538400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr5:15536800-15539200	Weak transcription	Fetal Brain Female	brain
26	chr5:15536800-15539600	Enhancers	Fetal Heart	heart
27	chr5:15537000-15537800	Weak transcription	HUES64 Cell Line	embryonic stem cell
28	chr5:15537200-15539600	Enhancers	Colon Smooth Muscle	Colon
29	chr5:15537400-15538600	Weak transcription	Brain Angular Gyrus	brain
30	chr5:15537600-15537800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr5:15537600-15538000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
32	chr5:15537600-15538000	Enhancers	Left Ventricle	heart
33	chr5:15537600-15538000	Enhancers	Ovary	ovary
34	chr5:15537600-15538200	Enhancers	Right Ventricle	heart
35	chr5:15537600-15539600	Enhancers	Cortex derived primary cultured neurospheres	brain
36	chr5:15537600-15539600	Enhancers	Brain Hippocampus Middle	brain
37	chr5:15537600-15539800	Enhancers	Fetal Muscle Leg	muscle

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