Variant report

Variant	rs28578872
Chromosome Location	chr7:136554662-136554663
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-AC015987.1-7	chr7:136554552-136554918	NONHSAT123562
2	lnc-AC015987.1-7	chr7:136554552-136556710	NONHSAT123563

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs13247260	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2278098	0.87[ASN][1000 genomes]
rs3735028	0.87[ASN][1000 genomes]
rs7791239	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029192	chr7:136433278-137147566	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:79 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:136552800-136554800	Active TSS	Stomach Smooth Muscle	stomach
2	chr7:136553000-136554800	Bivalent/Poised TSS	Osteobl	bone
3	chr7:136553000-136555200	Bivalent Enhancer	Primary hematopoietic stem cells short term culture	blood
4	chr7:136553000-136555200	Active TSS	Right Ventricle	heart
5	chr7:136553000-136556200	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
6	chr7:136553000-136556200	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
7	chr7:136553000-136556200	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr7:136553000-136556400	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr7:136553000-136556400	Bivalent/Poised TSS	Fetal Intestine Small	intestine
10	chr7:136553000-136556400	Bivalent/Poised TSS	Fetal Kidney	kidney
11	chr7:136553000-136556400	Active TSS	Rectal Mucosa Donor 29	rectum
12	chr7:136553000-136556600	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
13	chr7:136553000-136556600	Active TSS	Fetal Heart	heart
14	chr7:136553000-136556600	Bivalent/Poised TSS	Fetal Intestine Large	intestine
15	chr7:136553000-136556600	Active TSS	Left Ventricle	heart
16	chr7:136553000-136557000	Active TSS	Rectal Smooth Muscle	rectum
17	chr7:136553000-136558000	Active TSS	Right Atrium	heart
18	chr7:136553200-136555200	Flanking Bivalent TSS/Enh	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr7:136553200-136555200	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
20	chr7:136553200-136555200	Flanking Bivalent TSS/Enh	Brain Germinal Matrix	brain
21	chr7:136553200-136556000	Enhancers	Pancreas	Pancrea
22	chr7:136553200-136556200	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
23	chr7:136553200-136556200	Flanking Bivalent TSS/Enh	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr7:136553200-136556400	Bivalent Enhancer	Liver	Liver
25	chr7:136553200-136556600	Active TSS	Colon Smooth Muscle	Colon
26	chr7:136553400-136555000	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
27	chr7:136553400-136555200	Flanking Bivalent TSS/Enh	ES-UCSF4 Cell Line	embryonic stem cell
28	chr7:136553400-136555200	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
29	chr7:136553400-136555200	Flanking Bivalent TSS/Enh	Brain Hippocampus Middle	brain
30	chr7:136553400-136555800	Bivalent/Poised TSS	Colonic Mucosa	Colon
31	chr7:136553400-136556000	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
32	chr7:136553400-136556400	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
33	chr7:136553600-136554800	Bivalent/Poised TSS	Lung	lung
34	chr7:136553600-136554800	Flanking Bivalent TSS/Enh	Ovary	ovary
35	chr7:136553600-136555200	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
36	chr7:136553600-136555400	Flanking Bivalent TSS/Enh	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr7:136553600-136556000	Bivalent/Poised TSS	iPS DF 6.9 Cell Line	embryonic stem cell
38	chr7:136553600-136556000	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
39	chr7:136553800-136554800	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
40	chr7:136553800-136554800	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
41	chr7:136553800-136554800	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells	blood
42	chr7:136553800-136555200	Bivalent Enhancer	Fetal Brain Male	brain
43	chr7:136553800-136555400	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
44	chr7:136553800-136555400	Flanking Bivalent TSS/Enh	Fetal Stomach	stomach
45	chr7:136553800-136555800	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle
46	chr7:136554000-136555000	Flanking Active TSS	Placenta Amnion	Placenta Amnion
47	chr7:136554000-136555200	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr7:136554000-136555600	Flanking Bivalent TSS/Enh	Brain Cingulate Gyrus	brain
49	chr7:136554000-136556000	Active TSS	Rectal Mucosa Donor 31	rectum
50	chr7:136554000-136556000	Bivalent Enhancer	Spleen	Spleen

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