Variant report

Variant	rs3735028
Chromosome Location	chr7:136558158-136558159
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs13247260	0.87[ASN][1000 genomes]
rs1364493	1.00[CHB][hapmap];0.91[JPT][hapmap];0.85[ASN][1000 genomes]
rs1364494	1.00[CHB][hapmap];0.91[JPT][hapmap]
rs1364495	0.84[CHB][hapmap];0.82[JPT][hapmap];0.83[ASN][1000 genomes]
rs1424553	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs1424569	0.91[CHB][hapmap]
rs17168768	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs17168771	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2113550	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs2278098	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28578872	0.87[ASN][1000 genomes]
rs35736030	0.88[ASN][1000 genomes]
rs7791239	0.91[CHB][hapmap];0.84[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029192	chr7:136433278-137147566	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:136554200-136558800	Transcr. at gene 5' and 3'	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr7:136557000-136560000	Weak transcription	NHLF	lung
3	chr7:136557000-136567800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr7:136557200-136560400	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr7:136557400-136558800	Enhancers	Rectal Smooth Muscle	rectum
6	chr7:136557400-136558800	Enhancers	Stomach Smooth Muscle	stomach
7	chr7:136557400-136562600	Weak transcription	Colon Smooth Muscle	Colon
8	chr7:136557600-136558200	Enhancers	Right Ventricle	heart
9	chr7:136557800-136558600	Flanking Active TSS	Fetal Heart	heart
10	chr7:136558000-136609200	Weak transcription	Left Ventricle	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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