Variant report

Variant	rs1424569
Chromosome Location	chr7:136569416-136569417
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs13247260	0.82[ASN][1000 genomes]
rs1364493	0.91[CHB][hapmap];0.85[ASN][1000 genomes]
rs1364494	0.89[CHB][hapmap];0.91[ASN][1000 genomes]
rs1364495	0.86[ASN][1000 genomes]
rs2113550	0.91[CHB][hapmap];0.90[CHD][hapmap];0.82[JPT][hapmap];0.88[ASN][1000 genomes]
rs28578872	0.82[ASN][1000 genomes]
rs3735028	0.91[CHB][hapmap]
rs6944132	0.82[YRI][hapmap]
rs7791239	1.00[CHB][hapmap];0.84[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029192	chr7:136433278-137147566	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs1424569	CHRM2	cis	Heart Left Ventricle	GTEx
rs1424569	CREB3L2	cis	cerebellum	SCAN
rs1424569	CHRM2	cis	lung	GTEx
rs1424569	AKR1D1	cis	cerebellum	SCAN

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:136558000-136609200	Weak transcription	Left Ventricle	heart
2	chr7:136565200-136575200	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr7:136566400-136570200	Enhancers	Colon Smooth Muscle	Colon
4	chr7:136567800-136569600	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr7:136567800-136569600	Enhancers	Stomach Smooth Muscle	stomach
6	chr7:136568200-136574200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr7:136569000-136569800	Flanking Active TSS	Fetal Heart	heart
8	chr7:136569000-136577800	Weak transcription	Rectal Smooth Muscle	rectum
9	chr7:136569400-136579800	Weak transcription	Duodenum Smooth Muscle	Duodenum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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