Variant report

Variant	rs1364493
Chromosome Location	chr7:136565113-136565114
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1364494	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs1364495	0.84[CHB][hapmap];0.91[JPT][hapmap];0.98[ASN][1000 genomes]
rs1424569	0.91[CHB][hapmap]
rs2113550	1.00[CHB][hapmap];0.90[JPT][hapmap];0.93[ASN][1000 genomes]
rs2278098	0.85[ASN][1000 genomes]
rs35736030	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3735028	1.00[CHB][hapmap];0.91[JPT][hapmap];0.85[ASN][1000 genomes]
rs7791239	0.91[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029192	chr7:136433278-137147566	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:136557000-136567800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr7:136558000-136609200	Weak transcription	Left Ventricle	heart
3	chr7:136560600-136566800	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr7:136561200-136569000	Enhancers	Fetal Heart	heart
5	chr7:136562200-136565200	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr7:136563200-136567000	Weak transcription	Stomach Smooth Muscle	stomach
7	chr7:136563600-136566800	Weak transcription	NHLF	lung
8	chr7:136564000-136565600	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr7:136564200-136565200	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr7:136565000-136565800	Weak transcription	Rectal Smooth Muscle	rectum
11	chr7:136565000-136566400	Weak transcription	Colon Smooth Muscle	Colon
12	chr7:136565000-136566800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr7:136565000-136567000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr7:136565000-136567800	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr7:136565000-136567800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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