Variant report

Variant	rs35736030
Chromosome Location	chr7:136560479-136560480
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1364493	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1364494	0.87[ASN][1000 genomes]
rs1364495	0.92[ASN][1000 genomes]
rs2113550	0.90[ASN][1000 genomes]
rs2278098	0.88[ASN][1000 genomes]
rs3735028	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029192	chr7:136433278-137147566	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:136557000-136567800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr7:136557400-136562600	Weak transcription	Colon Smooth Muscle	Colon
3	chr7:136558000-136609200	Weak transcription	Left Ventricle	heart
4	chr7:136558600-136560800	Enhancers	Fetal Heart	heart
5	chr7:136558800-136561400	Weak transcription	Rectal Smooth Muscle	rectum
6	chr7:136558800-136562800	Weak transcription	Stomach Smooth Muscle	stomach
7	chr7:136559600-136562400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr7:136559800-136561400	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr7:136560000-136560600	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr7:136560400-136560600	Enhancers	H9 Cell Line	embryonic stem cell
11	chr7:136560400-136560600	Enhancers	Duodenum Smooth Muscle	Duodenum
12	chr7:136560400-136562200	Weak transcription	NHLF	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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