Variant report

Variant	rs285798
Chromosome Location	chr8:106083175-106083176
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:106075494..106077166-chr8:106081357..106083896,2	MCF-7	breast:
2	chr8:106082822..106084651-chr8:106097372..106099591,2	K562	blood:
3	chr8:106082783..106085372-chr8:106087525..106090132,2	K562	blood:

Extended variants
information (count: 30 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs176236	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2685537	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs285782	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs285783	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs285796	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs285814	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs285816	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs285819	0.96[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.97[GIH][hapmap];0.83[JPT][hapmap];0.96[MEX][hapmap];0.93[TSI][hapmap];0.82[EUR][1000 genomes]
rs285820	0.96[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs285824	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs285825	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs285826	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs285827	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs285828	0.85[EUR][1000 genomes]
rs285829	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs285833	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs285834	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs285835	0.85[EUR][1000 genomes]
rs285837	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs285838	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs285840	0.85[CEU][hapmap]
rs285842	0.84[CEU][hapmap];0.82[ASN][1000 genomes]
rs285843	0.85[CEU][hapmap];0.87[MEX][hapmap];0.82[ASN][1000 genomes]
rs285845	0.85[CEU][hapmap];0.85[CHD][hapmap];0.87[MEX][hapmap];0.80[ASN][1000 genomes]
rs285846	0.80[ASN][1000 genomes]
rs2926696	0.84[EUR][1000 genomes]
rs627350	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762763	chr8:105943295-106218634	Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv891253	chr8:105994885-106251476	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv891254	chr8:106060970-106175867	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs285798	NACAP1	cis	cerebellum	SCAN
rs285798	ZNF706	cis	cerebellum	SCAN

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:106081200-106083200	Enhancers	NH-A	brain
2	chr8:106081800-106083200	Enhancers	Hela-S3	cervix
3	chr8:106081800-106083200	Enhancers	HUVEC	blood vessel
4	chr8:106081800-106083400	Enhancers	HSMM	muscle
5	chr8:106081800-106084000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr8:106082200-106084000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr8:106082200-106086200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr8:106082400-106085600	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr8:106082600-106087600	Weak transcription	Fetal Heart	heart

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