Variant report

Variant	rs28582507
Chromosome Location	chr14:33071835-33071836
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10147330	1.00[EUR][1000 genomes]
rs28446746	1.00[EUR][1000 genomes]
rs58884441	1.00[EUR][1000 genomes]
rs59534984	1.00[EUR][1000 genomes]
rs8013267	1.00[EUR][1000 genomes]
rs927061	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045035	chr14:32986003-33543227	Weak transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv542021	chr14:32986003-33543227	Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv428624	chr14:33065571-33214223	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:33057800-33078200	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr14:33059400-33072000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr14:33064600-33074600	Weak transcription	Psoas Muscle	Psoas
4	chr14:33064600-33075600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr14:33064800-33079600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr14:33067400-33077800	Weak transcription	HSMM	muscle
7	chr14:33068600-33072000	Weak transcription	Brain Angular Gyrus	brain
8	chr14:33069800-33072400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr14:33069800-33080000	Weak transcription	Fetal Brain Female	brain
10	chr14:33070200-33072400	Enhancers	NHDF-Ad	bronchial
11	chr14:33070200-33072800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr14:33070400-33072400	Weak transcription	Brain Germinal Matrix	brain
13	chr14:33070400-33072600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr14:33070600-33072000	Enhancers	Stomach Smooth Muscle	stomach
15	chr14:33070800-33072400	Enhancers	Fetal Stomach	stomach
16	chr14:33071000-33076400	Weak transcription	Colon Smooth Muscle	Colon
17	chr14:33071200-33072000	Strong transcription	Aorta	Aorta
18	chr14:33071200-33072400	Enhancers	Brain Hippocampus Middle	brain
19	chr14:33071200-33076400	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr14:33071400-33072200	Enhancers	Placenta	Placenta
21	chr14:33071400-33072200	Enhancers	Left Ventricle	heart
22	chr14:33071400-33072200	Weak transcription	HSMMtube	muscle
23	chr14:33071400-33072400	Enhancers	Brain Inferior Temporal Lobe	brain
24	chr14:33071400-33072400	Enhancers	Brain Substantia Nigra	brain
25	chr14:33071400-33072800	Enhancers	Brain Anterior Caudate	brain
26	chr14:33071400-33072800	Enhancers	Right Ventricle	heart
27	chr14:33071600-33072200	Enhancers	Adipose Nuclei	Adipose
28	chr14:33071600-33072200	Enhancers	Fetal Muscle Trunk	muscle
29	chr14:33071600-33072400	Enhancers	Brain Cingulate Gyrus	brain
30	chr14:33071800-33072400	Enhancers	Fetal Muscle Leg	muscle
31	chr14:33071800-33072400	Enhancers	Skeletal Muscle Female	skeletal muscle
32	chr14:33071800-33073200	Enhancers	Fetal Heart	heart
33	chr14:33071800-33075600	Weak transcription	Skeletal Muscle Male	skeletal muscle
34	chr14:33071800-33076600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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