Variant report

Variant	rs58884441
Chromosome Location	chr14:33078717-33078718
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10147330	1.00[EUR][1000 genomes]
rs28446746	1.00[EUR][1000 genomes]
rs28582507	1.00[EUR][1000 genomes]
rs59534984	1.00[EUR][1000 genomes]
rs8013267	1.00[EUR][1000 genomes]
rs927061	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045035	chr14:32986003-33543227	Weak transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv542021	chr14:32986003-33543227	Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv428624	chr14:33065571-33214223	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:33064800-33079600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr14:33069800-33080000	Weak transcription	Fetal Brain Female	brain
3	chr14:33072200-33103600	Weak transcription	Fetal Muscle Trunk	muscle
4	chr14:33072400-33091800	Weak transcription	Left Ventricle	heart
5	chr14:33075600-33081600	Enhancers	Skeletal Muscle Female	skeletal muscle
6	chr14:33076000-33083200	Enhancers	NHDF-Ad	bronchial
7	chr14:33076600-33081200	Enhancers	Fetal Heart	heart
8	chr14:33076800-33080800	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr14:33077000-33080000	Weak transcription	Colon Smooth Muscle	Colon
10	chr14:33077600-33079200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr14:33077600-33082400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr14:33077800-33078800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr14:33077800-33078800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr14:33077800-33078800	Enhancers	NH-A	brain
15	chr14:33077800-33079000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr14:33077800-33079000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr14:33077800-33079000	Enhancers	HMEC	breast
18	chr14:33077800-33079400	Enhancers	Muscle Satellite Cultured Cells	--
19	chr14:33077800-33081600	Enhancers	Osteobl	bone
20	chr14:33078000-33078800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr14:33078000-33078800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr14:33078000-33078800	Enhancers	Brain Inferior Temporal Lobe	brain
23	chr14:33078000-33079000	Enhancers	NHLF	lung
24	chr14:33078000-33080400	Weak transcription	HSMM	muscle
25	chr14:33078000-33080800	Weak transcription	Rectal Smooth Muscle	rectum
26	chr14:33078000-33081000	Enhancers	Brain Anterior Caudate	brain
27	chr14:33078200-33078800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr14:33078200-33078800	Enhancers	Cortex derived primary cultured neurospheres	brain
29	chr14:33078200-33078800	Enhancers	Fetal Muscle Leg	muscle
30	chr14:33078200-33078800	Enhancers	Skeletal Muscle Male	skeletal muscle
31	chr14:33078200-33078800	Genic enhancers	HSMMtube	muscle
32	chr14:33078200-33079000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr14:33078200-33079800	Enhancers	Psoas Muscle	Psoas
34	chr14:33078200-33081600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr14:33078400-33078800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr14:33078400-33078800	Enhancers	Aorta	Aorta
37	chr14:33078400-33078800	Enhancers	Brain Angular Gyrus	brain
38	chr14:33078400-33078800	Weak transcription	Brain Substantia Nigra	brain
39	chr14:33078400-33079000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
40	chr14:33078400-33079000	Enhancers	HUES6 Cell Line	embryonic stem cell
41	chr14:33078400-33079000	Enhancers	Fetal Stomach	stomach
42	chr14:33078600-33078800	Enhancers	Right Atrium	heart
43	chr14:33078600-33079000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr14:33078600-33079000	Enhancers	iPS-18 Cell Line	embryonic stem cell
45	chr14:33078600-33079000	Enhancers	Right Ventricle	heart
46	chr14:33078600-33079200	Enhancers	Esophagus	oesophagus
47	chr14:33078600-33079400	Weak transcription	Brain Hippocampus Middle	brain
48	chr14:33078600-33080000	Enhancers	Stomach Smooth Muscle	stomach
49	chr14:33078600-33080200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr14:33078600-33080400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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