Variant report

Variant	rs28582899
Chromosome Location	chr4:96712991-96712992
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10008103	1.00[AFR][1000 genomes]
rs10012918	1.00[AMR][1000 genomes]
rs10016393	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28517461	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28670106	1.00[AMR][1000 genomes]
rs28860613	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59099304	1.00[AMR][1000 genomes]
rs59823345	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6532574	0.83[AFR][1000 genomes]
rs6815230	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72874579	1.00[AMR][1000 genomes]
rs72874585	1.00[AMR][1000 genomes]
rs72874586	1.00[AMR][1000 genomes]
rs72876306	1.00[AMR][1000 genomes]
rs72876307	1.00[AMR][1000 genomes]
rs72876308	1.00[AMR][1000 genomes]
rs72876325	1.00[AMR][1000 genomes]
rs72876327	1.00[AMR][1000 genomes]
rs73839634	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7655647	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7683473	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830012	chr4:96547783-96746163	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv997304	chr4:96575198-96861349	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv1010830	chr4:96607025-96862878	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv537191	chr4:96607025-96862878	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv594915	chr4:96628653-97086618	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv428767	chr4:96676384-96831793	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:96710600-96713800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr4:96711600-96713800	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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