Variant report

Variant	rs28860613
Chromosome Location	chr4:96686186-96686187
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10008103	1.00[AFR][1000 genomes]
rs10012918	1.00[AMR][1000 genomes]
rs10016393	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28517461	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28582899	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28670106	1.00[AMR][1000 genomes]
rs59823345	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6532574	0.83[AFR][1000 genomes]
rs6815230	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72874579	1.00[AMR][1000 genomes]
rs72874585	1.00[AMR][1000 genomes]
rs72874586	1.00[AMR][1000 genomes]
rs73839634	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7655647	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7683473	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830012	chr4:96547783-96746163	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv1844506	chr4:96554889-96704333	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv997304	chr4:96575198-96861349	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv1010830	chr4:96607025-96862878	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv537191	chr4:96607025-96862878	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv594915	chr4:96628653-97086618	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	nsv428767	chr4:96676384-96831793	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:96685200-96686400	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr4:96685400-96686400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr4:96685400-96686600	Enhancers	HMEC	breast
4	chr4:96685600-96686400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr4:96685800-96686400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr4:96685800-96686400	Enhancers	NHEK	skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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