Variant report

Variant	rs72874579
Chromosome Location	chr4:96827575-96827576
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10012918	1.00[AMR][1000 genomes]
rs10016393	1.00[AMR][1000 genomes]
rs28517461	1.00[AMR][1000 genomes]
rs28582899	1.00[AMR][1000 genomes]
rs28670106	1.00[AMR][1000 genomes]
rs28860613	1.00[AMR][1000 genomes]
rs57634276	0.81[AFR][1000 genomes]
rs59078315	0.81[AFR][1000 genomes]
rs59099304	1.00[AMR][1000 genomes]
rs59823345	1.00[AMR][1000 genomes]
rs72874585	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72874586	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72874596	0.81[AFR][1000 genomes]
rs72876306	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72876307	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72876308	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72876325	1.00[AMR][1000 genomes]
rs72876327	1.00[AMR][1000 genomes]
rs73839634	1.00[AMR][1000 genomes]
rs7683473	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv997304	chr4:96575198-96861349	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1010830	chr4:96607025-96862878	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv537191	chr4:96607025-96862878	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv594915	chr4:96628653-97086618	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv428767	chr4:96676384-96831793	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv10537	chr4:96757571-96956294	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:96827200-96832400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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