Variant report

Variant	rs28599843
Chromosome Location	chr14:26059825-26059826
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11159406	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11851946	0.86[EUR][1000 genomes]
rs1950449	0.83[EUR][1000 genomes]
rs1956772	0.93[EUR][1000 genomes]
rs6574511	0.91[EUR][1000 genomes]
rs7141626	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7160934	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72692222	0.83[EUR][1000 genomes]
rs72692244	0.83[EUR][1000 genomes]
rs8011455	0.83[EUR][1000 genomes]
rs8013460	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430993	chr14:25976760-26097160	Active TSS Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv427937	chr14:26038386-26405118	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:26055600-26061400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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