Variant report
| Variant | rs72692244 |
|---|---|
| Chromosome Location | chr14:26075417-26075418 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs11159406 | 0.84[EUR][1000 genomes] |
| rs11628534 | 0.86[ASN][1000 genomes] |
| rs11844629 | 0.90[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs11848741 | 0.89[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs11848812 | 0.89[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs11848891 | 0.89[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs11851803 | 0.89[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs11851933 | 0.87[EUR][1000 genomes] |
| rs11851946 | 0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs17110072 | 0.89[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs17110079 | 0.90[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs1950449 | 0.85[EUR][1000 genomes] |
| rs1956772 | 0.86[EUR][1000 genomes] |
| rs28599843 | 0.83[EUR][1000 genomes] |
| rs55908809 | 0.90[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs56145536 | 0.90[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs56756177 | 0.90[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs6574511 | 0.88[EUR][1000 genomes] |
| rs7141626 | 0.86[EUR][1000 genomes] |
| rs7160934 | 0.86[EUR][1000 genomes] |
| rs72690495 | 0.90[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs72692222 | 0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs74038014 | 0.85[EUR][1000 genomes] |
| rs8011455 | 0.85[EUR][1000 genomes] |
| rs8013460 | 0.85[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv430993 | chr14:25976760-26097160 | Active TSS Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 2 | nsv427937 | chr14:26038386-26405118 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr14:26075200-26076800 | Enhancers | H9 Derived Neuron Cultured Cells | ES cell derived |
