Variant report

Variant	rs6574511
Chromosome Location	chr14:26076248-26076249
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11159406	0.93[EUR][1000 genomes]
rs11851946	0.84[EUR][1000 genomes]
rs1950449	0.81[EUR][1000 genomes]
rs1956772	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28599843	0.91[EUR][1000 genomes]
rs7141626	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7160934	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72692222	0.81[EUR][1000 genomes]
rs72692244	0.88[EUR][1000 genomes]
rs8011455	0.81[EUR][1000 genomes]
rs8013460	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430993	chr14:25976760-26097160	Active TSS Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv427937	chr14:26038386-26405118	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:26075200-26076800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr14:26075800-26076400	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr14:26075800-26077000	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr14:26076000-26076800	Enhancers	H1 Cell Line	embryonic stem cell
5	chr14:26076000-26076800	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr14:26076000-26076800	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr14:26076000-26077000	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr14:26076000-26077200	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr14:26076000-26077200	Enhancers	Brain Substantia Nigra	brain
10	chr14:26076000-26077400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr14:26076000-26077800	Enhancers	Brain Hippocampus Middle	brain
12	chr14:26076000-26078400	Enhancers	Brain Cingulate Gyrus	brain
13	chr14:26076200-26077200	Enhancers	HUES64 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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