Variant report

Variant	rs28605206
Chromosome Location	chr3:86596869-86596870
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs13072938	0.81[ASN][1000 genomes]
rs13084991	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13092476	0.83[ASN][1000 genomes]
rs13433845	0.81[ASN][1000 genomes]
rs17027789	0.81[ASN][1000 genomes]
rs1845438	0.83[ASN][1000 genomes]
rs28891104	0.85[ASN][1000 genomes]
rs9829809	0.83[EUR][1000 genomes]
rs9839206	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9861438	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9869757	0.85[ASN][1000 genomes]
rs9881624	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532629	chr3:85763873-86608579	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv877116	chr3:86518318-86964922	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	esv1829775	chr3:86534927-86822085	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:86595000-86597200	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr3:86595000-86597600	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr3:86595000-86599200	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr3:86595400-86597200	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr3:86595600-86597200	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr3:86596000-86597400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
7	chr3:86596200-86597200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr3:86596400-86597200	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr3:86596600-86597000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr3:86596600-86597400	Active TSS	iPS-20b Cell Line	embryonic stem cell
11	chr3:86596600-86597800	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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