Variant report

Variant	rs9829809
Chromosome Location	chr3:86609267-86609268
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs12629681	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13072938	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13084991	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13092476	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13433845	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17027789	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1845434	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1845438	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1908295	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28605206	0.83[EUR][1000 genomes]
rs28891104	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6800896	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9810220	0.89[EUR][1000 genomes]
rs9810791	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9813778	0.95[CEU][hapmap];0.81[CHB][hapmap];0.95[JPT][hapmap]
rs9835126	0.95[CEU][hapmap];0.82[CHB][hapmap];0.95[JPT][hapmap]
rs9835169	0.95[CEU][hapmap];0.82[CHB][hapmap];0.95[JPT][hapmap]
rs9839206	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9861438	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9869757	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9870117	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9881624	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877116	chr3:86518318-86964922	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	esv1829775	chr3:86534927-86822085	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:86603800-86611200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr3:86608200-86611000	Weak transcription	HUES48 Cell Line	embryonic stem cell

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