Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs12637404	0.85[EUR][1000 genomes]
rs13072938	0.81[EUR][1000 genomes]
rs13084991	0.89[EUR][1000 genomes]
rs13089444	0.84[EUR][1000 genomes]
rs13092476	0.81[EUR][1000 genomes]
rs17027789	0.81[EUR][1000 genomes]
rs1845438	0.86[EUR][1000 genomes]
rs28891104	0.86[EUR][1000 genomes]
rs35725686	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6800896	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7652288	0.84[EUR][1000 genomes]
rs7652534	0.84[EUR][1000 genomes]
rs9810791	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9813778	0.90[CEU][hapmap];0.81[TSI][hapmap]
rs9815232	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9829809	0.89[EUR][1000 genomes]
rs9835126	0.90[CEU][hapmap]
rs9835169	0.90[CEU][hapmap]
rs9839138	0.84[EUR][1000 genomes]
rs9839206	0.89[EUR][1000 genomes]
rs9861438	0.89[EUR][1000 genomes]
rs9869757	0.86[EUR][1000 genomes]
rs9870117	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9881624	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877116	chr3:86518318-86964922	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	esv1829775	chr3:86534927-86822085	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9810220	CADM2	cis	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:86654400-86655400	Enhancers	Cortex derived primary cultured neurospheres	brain

Quick Search: