Variant report

Variant	rs7652534
Chromosome Location	chr3:86720689-86720690
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs1158572	0.91[EUR][1000 genomes]
rs12631630	0.90[EUR][1000 genomes]
rs12636089	0.91[EUR][1000 genomes]
rs12637404	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13068976	0.90[EUR][1000 genomes]
rs13089444	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35026018	0.91[EUR][1000 genomes]
rs35725686	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4331677	0.86[EUR][1000 genomes]
rs4423767	0.91[EUR][1000 genomes]
rs4528946	0.89[EUR][1000 genomes]
rs4552353	0.89[EUR][1000 genomes]
rs4555522	0.89[EUR][1000 genomes]
rs4589938	0.89[EUR][1000 genomes]
rs4613455	0.90[EUR][1000 genomes]
rs4634118	0.86[EUR][1000 genomes]
rs4855155	0.89[EUR][1000 genomes]
rs4855157	0.90[EUR][1000 genomes]
rs4855159	0.91[EUR][1000 genomes]
rs60037607	0.85[EUR][1000 genomes]
rs6763447	0.91[EUR][1000 genomes]
rs6797231	0.84[EUR][1000 genomes]
rs6800896	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6804348	0.84[EUR][1000 genomes]
rs7621447	0.90[EUR][1000 genomes]
rs7652288	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9810220	0.84[EUR][1000 genomes]
rs9811859	0.91[EUR][1000 genomes]
rs9815232	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9822222	0.85[EUR][1000 genomes]
rs9828696	0.89[EUR][1000 genomes]
rs9835126	0.90[CEU][hapmap]
rs9835169	0.90[CEU][hapmap]
rs9839138	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9839595	0.91[EUR][1000 genomes]
rs9849115	0.91[EUR][1000 genomes]
rs9854920	0.91[EUR][1000 genomes]
rs9859549	0.91[EUR][1000 genomes]
rs9868939	0.91[EUR][1000 genomes]
rs9869426	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877116	chr3:86518318-86964922	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	esv1829775	chr3:86534927-86822085	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv877117	chr3:86665408-86927574	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv1009339	chr3:86673173-86725713	Weak transcription Enhancers ZNF genes & repeats Active TSS	lncRNA	2 gene(s)	inside rSNPs	n/a
5	esv1794028	chr3:86684769-86822085	Enhancers Active TSS Weak transcription ZNF genes & repeats	lncRNA	11 gene(s)	inside rSNPs	n/a
6	esv1827728	chr3:86684769-86822085	Enhancers Weak transcription ZNF genes & repeats Active TSS	lncRNA	11 gene(s)	inside rSNPs	n/a
7	nsv1005747	chr3:86701703-86792434	Enhancers Active TSS ZNF genes & repeats Weak transcription	lncRNA	11 gene(s)	inside rSNPs	n/a
8	nsv536630	chr3:86701703-86792434	Weak transcription ZNF genes & repeats Enhancers Active TSS	lncRNA	11 gene(s)	inside rSNPs	n/a
9	nsv999877	chr3:86704171-86795449	Enhancers Active TSS Weak transcription ZNF genes & repeats	lncRNA	11 gene(s)	inside rSNPs	n/a
10	nsv527690	chr3:86711294-86794501	Weak transcription Enhancers ZNF genes & repeats Active TSS	lncRNA	10 gene(s)	inside rSNPs	n/a

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7652534	CADM2	cis	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:86720600-86721600	Enhancers	Fetal Intestine Large	intestine

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