Variant report
Variant | rs9870117 |
---|---|
Chromosome Location | chr3:86586981-86586982 |
allele | C/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs12629681 | 0.87[EUR][1000 genomes] |
rs13072938 | 0.95[EUR][1000 genomes] |
rs13084991 | 0.88[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs13092476 | 0.95[EUR][1000 genomes] |
rs13433845 | 0.93[EUR][1000 genomes] |
rs17027789 | 0.95[EUR][1000 genomes] |
rs1845434 | 0.93[EUR][1000 genomes] |
rs1845438 | 0.90[AMR][1000 genomes];0.99[EUR][1000 genomes] |
rs1908295 | 0.87[EUR][1000 genomes] |
rs28831842 | 0.80[EUR][1000 genomes] |
rs28891104 | 0.88[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs34488099 | 0.80[EUR][1000 genomes] |
rs35725686 | 0.91[AFR][1000 genomes] |
rs6800896 | 0.85[EUR][1000 genomes] |
rs73844225 | 0.81[EUR][1000 genomes] |
rs9810220 | 0.82[AMR][1000 genomes];0.86[EUR][1000 genomes] |
rs9810791 | 0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs9811445 | 0.81[EUR][1000 genomes] |
rs9813778 | 0.80[EUR][1000 genomes] |
rs9815232 | 0.91[AFR][1000 genomes] |
rs9829809 | 0.82[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs9830475 | 0.81[EUR][1000 genomes] |
rs9830624 | 0.81[EUR][1000 genomes] |
rs9831274 | 0.81[EUR][1000 genomes] |
rs9835126 | 0.81[EUR][1000 genomes] |
rs9835169 | 0.81[EUR][1000 genomes] |
rs9839206 | 0.82[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs9847978 | 0.81[EUR][1000 genomes] |
rs9848467 | 0.81[EUR][1000 genomes] |
rs9848758 | 0.80[EUR][1000 genomes] |
rs9853248 | 0.81[EUR][1000 genomes] |
rs9861438 | 0.85[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs9869757 | 0.90[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs9881624 | 0.82[AMR][1000 genomes];0.94[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv532629 | chr3:85763873-86608579 | Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
2 | nsv877116 | chr3:86518318-86964922 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 12 gene(s) | inside rSNPs | diseases |
3 | esv1829775 | chr3:86534927-86822085 | Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS | Chromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr3:86586800-86587000 | Enhancers | HUES6 Cell Line | embryonic stem cell |