Variant report

Variant	rs9881624
Chromosome Location	chr3:86611381-86611382
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs12629681	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13072938	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13084991	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13092476	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13433845	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17027789	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1845434	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1845438	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1908295	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28605206	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28831842	0.83[ASN][1000 genomes]
rs28891104	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6800896	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73844225	0.83[ASN][1000 genomes]
rs9810220	0.89[EUR][1000 genomes]
rs9810791	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9811445	0.83[ASN][1000 genomes]
rs9813778	0.95[CEU][hapmap];0.81[CHB][hapmap];0.95[JPT][hapmap]
rs9829809	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9830475	0.83[ASN][1000 genomes]
rs9830624	0.83[ASN][1000 genomes]
rs9831274	0.83[ASN][1000 genomes]
rs9835126	0.95[CEU][hapmap];0.82[CHB][hapmap];0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs9835169	0.95[CEU][hapmap];0.81[CHB][hapmap];0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs9839206	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9847978	0.83[ASN][1000 genomes]
rs9848467	0.83[ASN][1000 genomes]
rs9848758	0.83[ASN][1000 genomes]
rs9853248	0.83[ASN][1000 genomes]
rs9861438	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9869757	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9870117	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877116	chr3:86518318-86964922	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	esv1829775	chr3:86534927-86822085	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:86609600-86611400	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr3:86611000-86611600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr3:86611000-86611800	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr3:86611000-86612000	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr3:86611000-86613000	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr3:86611000-86613000	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr3:86611200-86611400	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
8	chr3:86611200-86611600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr3:86611200-86611600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr3:86611200-86611800	Enhancers	H1 Cell Line	embryonic stem cell
11	chr3:86611200-86611800	Enhancers	H9 Cell Line	embryonic stem cell
12	chr3:86611200-86612000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr3:86611200-86612200	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr3:86611200-86613000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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