Variant report

Variant	rs2860906
Chromosome Location	chr10:96704576-96704577
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs11188105	0.84[ASN][1000 genomes]
rs11595422	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1200313	0.90[ASN][1000 genomes]
rs12772675	0.94[ASN][1000 genomes]
rs12772884	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1505	0.89[ASN][1000 genomes]
rs1853208	0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs1856908	0.89[ASN][1000 genomes]
rs1934960	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1934964	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1934965	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1998321	0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2096069	0.87[ASN][1000 genomes]
rs2104162	0.81[ASN][1000 genomes]
rs2253635	0.90[ASN][1000 genomes]
rs35013847	0.82[ASN][1000 genomes]
rs35687798	0.94[ASN][1000 genomes]
rs3740504	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs4110516	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs4466755	0.81[ASN][1000 genomes]
rs4608002	0.81[ASN][1000 genomes]
rs4638239	0.80[AMR][1000 genomes]
rs4917641	0.94[ASN][1000 genomes]
rs4918758	0.92[ASN][1000 genomes]
rs4918766	0.94[ASN][1000 genomes]
rs6583963	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs6583964	0.90[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs7073165	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7083767	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7475054	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7895963	0.84[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs7903917	0.88[ASN][1000 genomes]
rs7912502	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv497859	chr10:96058024-97027747	Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv1035409	chr10:96495177-96832057	Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	esv3336672	chr10:96543010-96711519	Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1037973	chr10:96563228-96711744	Weak transcription Active TSS Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv1047782	chr10:96581094-96718479	Weak transcription Strong transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv529726	chr10:96632494-97106315	Strong transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
7	nsv551962	chr10:96680265-96734339	Weak transcription ZNF genes & repeats Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:96702600-96705000	Strong transcription	Liver	Liver
2	chr10:96704400-96704800	ZNF genes & repeats	Fetal Intestine Large	intestine
3	chr10:96704400-96705400	Weak transcription	Duodenum Mucosa	Duodenum

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