Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1200313	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12772675	0.84[ASN][1000 genomes]
rs12772884	0.89[ASN][1000 genomes]
rs1505	0.82[ASN][1000 genomes]
rs1856908	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1934960	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs1934964	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1934965	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2096069	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2253635	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2860906	0.88[ASN][1000 genomes]
rs35687798	0.84[ASN][1000 genomes]
rs3740504	0.85[ASN][1000 genomes]
rs4917641	0.84[ASN][1000 genomes]
rs4918758	0.82[ASN][1000 genomes]
rs4918766	0.84[ASN][1000 genomes]
rs6583963	0.80[ASN][1000 genomes]
rs7073165	0.89[ASN][1000 genomes]
rs7079343	0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7083767	0.88[ASN][1000 genomes]
rs7475054	0.87[ASN][1000 genomes]
rs7895223	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7899661	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv497859	chr10:96058024-97027747	Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv1035409	chr10:96495177-96832057	Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv529726	chr10:96632494-97106315	Strong transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:96752200-96757400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr10:96752800-96757400	Weak transcription	Placenta	Placenta
3	chr10:96753000-96757600	Weak transcription	H1 Cell Line	embryonic stem cell

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