Variant report

Variant	rs1505
Chromosome Location	chr10:96750759-96750760
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs1200313	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs12772675	0.91[YRI][hapmap];0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12772884	0.85[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs1322181	0.95[JPT][hapmap]
rs1555474	0.95[JPT][hapmap]
rs1856908	0.95[JPT][hapmap]
rs1934960	0.87[ASN][1000 genomes]
rs1934964	0.89[ASN][1000 genomes]
rs1934965	0.89[ASN][1000 genomes]
rs1934969	0.80[CHB][hapmap];0.95[JPT][hapmap]
rs2104161	0.86[JPT][hapmap]
rs2104162	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2253635	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs2860905	0.91[YRI][hapmap]
rs2860906	0.89[ASN][1000 genomes]
rs34234478	0.80[ASN][1000 genomes]
rs35013847	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35687798	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3740504	0.84[ASN][1000 genomes]
rs4608002	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4617515	0.95[JPT][hapmap]
rs4917623	0.95[JPT][hapmap]
rs4917641	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4918758	0.87[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4918766	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7073165	0.89[ASN][1000 genomes]
rs7083767	0.88[ASN][1000 genomes]
rs7475054	0.86[ASN][1000 genomes]
rs7903917	0.82[ASN][1000 genomes]
rs7906871	0.81[EUR][1000 genomes]
rs7915414	0.84[CHB][hapmap];0.95[JPT][hapmap];0.80[YRI][hapmap]
rs9332172	0.91[YRI][hapmap];0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv497859	chr10:96058024-97027747	Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv1035409	chr10:96495177-96832057	Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv529726	chr10:96632494-97106315	Strong transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:96743800-96751600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr10:96749400-96750800	Weak transcription	Liver	Liver

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