Variant report

Variant	rs1934969
Chromosome Location	chr10:96748495-96748496
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs11188105	0.80[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs11595422	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1200313	0.82[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs12772675	0.92[ASN][1000 genomes]
rs12772884	0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1322181	0.85[CHB][hapmap];0.91[JPT][hapmap]
rs1505	0.90[ASN][1000 genomes]
rs1555474	0.85[CHB][hapmap];0.91[JPT][hapmap]
rs1853208	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1856908	0.81[CHB][hapmap];0.90[JPT][hapmap];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1934960	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1934964	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1934965	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1998321	0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2096069	0.87[ASN][1000 genomes]
rs2104161	0.81[CHB][hapmap];0.82[JPT][hapmap]
rs2253635	0.81[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs2860906	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35013847	0.80[ASN][1000 genomes]
rs35687798	0.92[ASN][1000 genomes]
rs3740504	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4110516	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs4466755	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs4617515	0.85[CHB][hapmap];0.91[JPT][hapmap]
rs4917623	0.91[JPT][hapmap]
rs4917641	0.92[ASN][1000 genomes]
rs4918758	0.84[CHB][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs4918766	0.89[CHB][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs6583963	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6583964	0.94[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs7073165	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7083767	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7475054	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7895963	0.80[ASN][1000 genomes]
rs7903917	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7912502	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs7915414	0.91[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv497859	chr10:96058024-97027747	Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv1035409	chr10:96495177-96832057	Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv529726	chr10:96632494-97106315	Strong transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:96738000-96749800	Weak transcription	Fetal Intestine Small	intestine
2	chr10:96738800-96748600	Weak transcription	Duodenum Mucosa	Duodenum
3	chr10:96743800-96751600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr10:96747600-96749200	Weak transcription	Fetal Intestine Large	intestine
5	chr10:96748400-96749000	ZNF genes & repeats	Liver	Liver

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