Variant report

Variant	rs28610468
Chromosome Location	chr7:14849333-14849334
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10081218	0.84[ASN][1000 genomes]
rs10215697	0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs10226709	0.82[ASN][1000 genomes]
rs10232210	0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs10253171	0.87[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs10277367	0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1079946	0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs1079947	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1120408	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs1120409	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs11972669	0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1525091	0.80[ASN][1000 genomes]
rs1525092	0.80[ASN][1000 genomes]
rs1639238	0.80[ASN][1000 genomes]
rs1639239	0.80[ASN][1000 genomes]
rs1639240	0.80[ASN][1000 genomes]
rs1639241	0.80[ASN][1000 genomes]
rs17168405	0.82[ASN][1000 genomes]
rs1723231	0.80[ASN][1000 genomes]
rs1723232	0.80[ASN][1000 genomes]
rs1723233	0.80[ASN][1000 genomes]
rs1723234	0.80[ASN][1000 genomes]
rs1723236	0.80[ASN][1000 genomes]
rs1981680	0.87[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2012289	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2109497	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2191477	0.81[ASN][1000 genomes]
rs2191480	0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs2358069	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4518556	0.83[ASN][1000 genomes]
rs4719419	0.80[ASN][1000 genomes]
rs4721368	0.80[ASN][1000 genomes]
rs4721376	0.87[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs5014691	0.85[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs6461129	0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs6461133	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6461135	0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs67104645	0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs6952066	0.83[ASN][1000 genomes]
rs6976200	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7458312	0.86[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs7776924	0.80[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7779072	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7782994	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7786354	0.82[ASN][1000 genomes]
rs7789633	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7798664	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7808899	0.84[ASN][1000 genomes]
rs979498	0.83[ASN][1000 genomes]
rs982707	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949033	chr7:14086106-14860323	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1031041	chr7:14624127-14999201	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv538741	chr7:14624127-14999201	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1020722	chr7:14792114-14871907	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1024192	chr7:14825622-14850257	Enhancers Active TSS Flanking Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:14847400-14861400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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