Variant report

Variant	rs6461129
Chromosome Location	chr7:14835951-14835952
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 86 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:81)

rs_ID	r²[population]
rs10081218	0.87[ASN][1000 genomes]
rs10215697	0.92[ASN][1000 genomes]
rs10226709	0.85[ASN][1000 genomes]
rs10232210	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10253171	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10277367	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1079946	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1079947	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1120408	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1120409	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11972669	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1525090	0.83[ASN][1000 genomes]
rs1525091	0.83[ASN][1000 genomes]
rs1525092	0.83[ASN][1000 genomes]
rs1525096	0.80[ASN][1000 genomes]
rs1525097	0.80[ASN][1000 genomes]
rs1525098	0.80[ASN][1000 genomes]
rs1639233	0.80[ASN][1000 genomes]
rs1639236	0.80[ASN][1000 genomes]
rs1639238	0.83[ASN][1000 genomes]
rs1639239	0.83[ASN][1000 genomes]
rs1639240	0.83[ASN][1000 genomes]
rs1639241	0.83[ASN][1000 genomes]
rs17168405	0.86[ASN][1000 genomes]
rs1723221	0.81[ASN][1000 genomes]
rs1723222	0.81[ASN][1000 genomes]
rs1723223	0.84[ASN][1000 genomes]
rs1723224	0.84[ASN][1000 genomes]
rs1723225	0.83[ASN][1000 genomes]
rs1723226	0.83[ASN][1000 genomes]
rs1723227	0.83[ASN][1000 genomes]
rs1723228	0.83[ASN][1000 genomes]
rs1723229	0.84[ASN][1000 genomes]
rs1723230	0.84[ASN][1000 genomes]
rs1723231	0.83[ASN][1000 genomes]
rs1723232	0.83[ASN][1000 genomes]
rs1723233	0.83[ASN][1000 genomes]
rs1723234	0.83[ASN][1000 genomes]
rs1723235	0.82[ASN][1000 genomes]
rs1723236	0.83[ASN][1000 genomes]
rs1723237	0.83[ASN][1000 genomes]
rs1723238	0.83[ASN][1000 genomes]
rs1723239	0.83[ASN][1000 genomes]
rs1723244	0.81[ASN][1000 genomes]
rs1723245	0.81[ASN][1000 genomes]
rs1723246	0.81[ASN][1000 genomes]
rs1723247	0.81[ASN][1000 genomes]
rs1723248	0.81[ASN][1000 genomes]
rs1723250	0.80[ASN][1000 genomes]
rs1723251	0.80[ASN][1000 genomes]
rs1723252	0.80[ASN][1000 genomes]
rs1723256	0.81[ASN][1000 genomes]
rs1880549	0.84[ASN][1000 genomes]
rs1981680	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2012289	0.87[ASN][1000 genomes]
rs2109497	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2191477	0.85[ASN][1000 genomes]
rs2191480	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2358069	0.86[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs28610468	0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs4518556	0.86[ASN][1000 genomes]
rs4632953	0.84[ASN][1000 genomes]
rs4719419	0.83[ASN][1000 genomes]
rs4721368	0.83[ASN][1000 genomes]
rs4721376	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs5014691	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6461133	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs6461135	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs67104645	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6952066	0.86[ASN][1000 genomes]
rs6976200	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7458312	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7776924	0.88[ASN][1000 genomes]
rs7779072	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7782994	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7786354	0.86[ASN][1000 genomes]
rs7789633	0.88[ASN][1000 genomes]
rs7798664	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7808899	0.88[ASN][1000 genomes]
rs979498	0.86[ASN][1000 genomes]
rs982707	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949033	chr7:14086106-14860323	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1031041	chr7:14624127-14999201	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv538741	chr7:14624127-14999201	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1020722	chr7:14792114-14871907	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1024192	chr7:14825622-14850257	Enhancers Active TSS Flanking Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:14834600-14836000	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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