Variant report

Variant	rs7798664
Chromosome Location	chr7:14841177-14841178
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 110 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:104)

rs_ID	r²[population]
rs10081218	0.95[CHB][hapmap];0.95[JPT][hapmap];0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs10215697	0.87[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs10226709	0.91[CHB][hapmap];0.91[CHD][hapmap];0.80[GIH][hapmap];0.91[JPT][hapmap];0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs10232210	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10237911	0.91[CHB][hapmap];0.91[CHD][hapmap]
rs10243441	0.86[JPT][hapmap]
rs10253171	0.85[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.87[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs10258190	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs10273485	0.85[JPT][hapmap]
rs10273894	0.90[JPT][hapmap]
rs10277367	0.80[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.95[JPT][hapmap];0.87[MEX][hapmap];0.87[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10280027	0.85[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs10487779	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.91[TSI][hapmap];1.00[YRI][hapmap]
rs1079946	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1079947	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs1120408	0.87[ASW][hapmap];0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];0.87[MEX][hapmap];0.87[MKK][hapmap];0.94[YRI][hapmap];0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1120409	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs11972669	0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs12673704	0.91[JPT][hapmap]
rs1464821	0.91[CHB][hapmap];0.91[CHD][hapmap];0.82[JPT][hapmap];0.91[MEX][hapmap]
rs1525090	0.81[ASN][1000 genomes]
rs1525091	0.95[CHB][hapmap];0.93[CHD][hapmap];0.82[JPT][hapmap];0.91[MEX][hapmap];0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs1525092	0.95[CHB][hapmap];0.82[JPT][hapmap];0.81[ASN][1000 genomes]
rs1525097	0.95[CHB][hapmap]
rs1525098	0.85[CHB][hapmap];0.88[JPT][hapmap]
rs1639230	0.95[CHB][hapmap];0.88[CHD][hapmap];0.80[GIH][hapmap];0.86[JPT][hapmap];0.91[MEX][hapmap]
rs1639233	0.95[CHB][hapmap]
rs1639234	0.95[CHB][hapmap];0.93[CHD][hapmap];0.82[JPT][hapmap];0.91[MEX][hapmap]
rs1639236	0.95[CHB][hapmap];0.82[JPT][hapmap]
rs1639238	0.95[CHB][hapmap];0.82[JPT][hapmap];0.81[ASN][1000 genomes]
rs1639239	0.95[CHB][hapmap];0.93[CHD][hapmap];0.82[JPT][hapmap];0.91[MEX][hapmap];0.81[ASN][1000 genomes]
rs1639240	0.95[CHB][hapmap];0.82[JPT][hapmap];0.81[ASN][1000 genomes]
rs1639241	0.95[CHB][hapmap];0.82[JPT][hapmap];0.81[ASN][1000 genomes]
rs17168405	0.95[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1723221	0.95[CHB][hapmap];0.91[JPT][hapmap];0.80[ASN][1000 genomes]
rs1723222	0.80[ASN][1000 genomes]
rs1723223	0.82[ASN][1000 genomes]
rs1723224	0.82[ASN][1000 genomes]
rs1723225	0.81[ASN][1000 genomes]
rs1723226	0.95[CHB][hapmap];0.89[CHD][hapmap];0.82[JPT][hapmap];0.91[MEX][hapmap];0.81[ASN][1000 genomes]
rs1723227	0.81[ASN][1000 genomes]
rs1723228	0.81[ASN][1000 genomes]
rs1723229	0.95[CHB][hapmap];0.86[JPT][hapmap];0.82[ASN][1000 genomes]
rs1723230	0.95[CHB][hapmap];0.93[CHD][hapmap];0.86[JPT][hapmap];0.91[MEX][hapmap];0.82[ASN][1000 genomes]
rs1723231	0.95[CHB][hapmap];0.82[JPT][hapmap];0.81[ASN][1000 genomes]
rs1723232	0.95[CHB][hapmap];0.82[JPT][hapmap];0.81[ASN][1000 genomes]
rs1723233	0.95[CHB][hapmap];0.85[JPT][hapmap];0.81[ASN][1000 genomes]
rs1723234	0.95[CHB][hapmap];0.82[JPT][hapmap];0.81[ASN][1000 genomes]
rs1723235	0.95[CHB][hapmap];0.81[JPT][hapmap];0.80[ASN][1000 genomes]
rs1723236	0.95[CHB][hapmap];0.82[JPT][hapmap];0.81[ASN][1000 genomes]
rs1723237	0.91[CHB][hapmap];0.82[JPT][hapmap];0.81[ASN][1000 genomes]
rs1723238	0.82[CEU][hapmap];0.95[CHB][hapmap];0.82[JPT][hapmap];0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs1723239	0.81[ASN][1000 genomes]
rs1723244	0.95[CHB][hapmap];0.82[JPT][hapmap]
rs1723245	0.95[CHB][hapmap];0.82[JPT][hapmap]
rs1723246	0.95[CHB][hapmap];0.82[JPT][hapmap]
rs1723247	0.95[CHB][hapmap];0.82[JPT][hapmap]
rs1723248	0.95[CHB][hapmap];0.80[AMR][1000 genomes]
rs1723250	0.95[CHB][hapmap];0.81[JPT][hapmap]
rs1723255	0.86[CHB][hapmap]
rs1880549	0.95[CHB][hapmap];0.82[JPT][hapmap];0.82[ASN][1000 genomes]
rs1981680	0.85[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.95[JPT][hapmap];0.88[MEX][hapmap];0.87[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2012289	0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2091258	0.80[AMR][1000 genomes]
rs2109497	0.85[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2191477	0.95[CHB][hapmap];0.95[JPT][hapmap];0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2191480	0.85[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2358067	0.86[JPT][hapmap]
rs2358069	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28610468	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4518556	0.95[CHB][hapmap];0.86[JPT][hapmap];0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs4632953	0.95[CHB][hapmap];0.86[JPT][hapmap];0.82[ASN][1000 genomes]
rs4719419	0.95[CHB][hapmap];0.82[JPT][hapmap];0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs4721368	0.95[CHB][hapmap];0.82[JPT][hapmap];0.81[ASN][1000 genomes]
rs4721376	0.85[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.87[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs5014691	0.80[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.95[JPT][hapmap];0.87[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs6461129	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs6461133	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.97[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6461135	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs67104645	0.87[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs6942721	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6948538	0.91[LWK][hapmap];1.00[YRI][hapmap]
rs6952066	0.80[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs6967001	0.94[CEU][hapmap];0.86[JPT][hapmap]
rs6976200	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6977546	0.94[CHB][hapmap]
rs714980	0.95[CHB][hapmap];1.00[CHD][hapmap];0.80[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap]
rs7456390	0.95[CHB][hapmap];0.95[JPT][hapmap];0.87[MEX][hapmap]
rs7458312	0.88[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7776924	0.95[CHB][hapmap];0.91[JPT][hapmap];0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7779072	1.00[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap];0.84[YRI][hapmap];0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7782994	0.80[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7786354	0.80[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs7789633	0.95[CHB][hapmap];0.95[CHD][hapmap];0.80[GIH][hapmap];0.91[JPT][hapmap];0.91[MEX][hapmap];0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7789696	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7796443	0.91[JPT][hapmap]
rs7808899	0.95[CHB][hapmap];0.93[CHD][hapmap];0.80[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs9690434	0.90[JPT][hapmap]
rs975432	0.85[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.94[YRI][hapmap]
rs979498	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs979499	0.86[JPT][hapmap]
rs979501	0.86[JPT][hapmap]
rs982707	0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs995871	0.95[CHB][hapmap];0.95[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949033	chr7:14086106-14860323	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1031041	chr7:14624127-14999201	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv538741	chr7:14624127-14999201	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1020722	chr7:14792114-14871907	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1024192	chr7:14825622-14850257	Enhancers Active TSS Flanking Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	esv9860	chr7:14837460-14841270	Enhancers	n/a	n/a	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs7798664	ARL4A	cis	cerebellum	SCAN
rs7798664	DGKB	cis	cerebellum	SCAN
rs7798664	SCIN	cis	cerebellum	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:14840600-14841200	Enhancers	Skeletal Muscle Male	skeletal muscle

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