Variant report

Variant	rs12673704
Chromosome Location	chr7:14821817-14821818
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 96 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:91)

rs_ID	r²[population]
rs10081218	0.94[CEU][hapmap];0.81[JPT][hapmap]
rs10215015	0.80[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10226709	0.81[CEU][hapmap];0.81[JPT][hapmap]
rs10234845	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10237911	0.93[CEU][hapmap]
rs10243441	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs10253171	0.91[JPT][hapmap]
rs10258190	0.94[CEU][hapmap];0.91[JPT][hapmap]
rs10273485	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs10273894	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs10277367	0.86[JPT][hapmap]
rs10280027	0.91[JPT][hapmap]
rs10487779	0.91[JPT][hapmap]
rs1120408	0.91[JPT][hapmap]
rs1120409	0.91[JPT][hapmap]
rs1464821	0.87[CEU][hapmap]
rs1525091	0.87[CEU][hapmap]
rs1525092	0.88[CEU][hapmap]
rs1525094	0.93[CEU][hapmap];1.00[CHB][hapmap];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1525095	0.93[CEU][hapmap];1.00[CHB][hapmap];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1525097	0.84[CEU][hapmap]
rs1525098	0.87[CEU][hapmap]
rs1639230	0.87[CEU][hapmap]
rs1639233	0.94[CEU][hapmap]
rs1639234	0.87[CEU][hapmap]
rs1639236	0.87[CEU][hapmap]
rs1639238	0.93[CEU][hapmap]
rs1639239	0.87[CEU][hapmap]
rs1639240	0.88[CEU][hapmap]
rs1639241	0.88[CEU][hapmap]
rs17168405	0.88[CEU][hapmap];0.86[JPT][hapmap]
rs1723221	0.88[CEU][hapmap]
rs1723226	0.87[CEU][hapmap]
rs1723229	0.88[CEU][hapmap]
rs1723230	0.87[CEU][hapmap]
rs1723231	0.88[CEU][hapmap]
rs1723232	0.88[CEU][hapmap]
rs1723233	0.88[CEU][hapmap]
rs1723234	0.87[CEU][hapmap]
rs1723235	0.84[CEU][hapmap]
rs1723236	0.88[CEU][hapmap]
rs1723237	0.87[CEU][hapmap]
rs1723238	0.94[CEU][hapmap]
rs1723239	0.88[CEU][hapmap]
rs1723244	0.88[CEU][hapmap]
rs1723245	0.88[CEU][hapmap]
rs1723246	0.88[CEU][hapmap]
rs1723247	0.87[CEU][hapmap]
rs1723248	0.88[CEU][hapmap]
rs1723250	0.85[CEU][hapmap]
rs1723255	0.88[CEU][hapmap]
rs1880549	0.88[CEU][hapmap]
rs1880551	0.94[CEU][hapmap];1.00[CHB][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1880552	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1880553	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1981680	0.86[JPT][hapmap]
rs2098145	0.93[CEU][hapmap];1.00[CHB][hapmap];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2109497	0.91[JPT][hapmap]
rs2191477	0.88[CEU][hapmap];0.82[JPT][hapmap]
rs2191480	0.91[JPT][hapmap]
rs2358067	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.91[YRI][hapmap];0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4518556	0.88[CEU][hapmap]
rs4632953	0.88[CEU][hapmap]
rs4719419	0.88[CEU][hapmap]
rs4721361	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4721364	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4721368	0.81[CEU][hapmap]
rs4721376	0.86[JPT][hapmap]
rs5014691	0.86[JPT][hapmap]
rs6461133	0.86[JPT][hapmap]
rs6942721	0.91[JPT][hapmap]
rs6946940	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6947133	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6957593	0.85[CEU][hapmap];1.00[CHB][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6967001	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs714980	0.87[CEU][hapmap];0.91[JPT][hapmap]
rs7456390	0.86[JPT][hapmap]
rs7776924	0.81[JPT][hapmap]
rs7779072	0.82[JPT][hapmap]
rs7782994	0.82[JPT][hapmap]
rs7789633	0.87[CEU][hapmap];0.81[JPT][hapmap]
rs7789696	0.91[JPT][hapmap]
rs7796443	1.00[CHB][hapmap];0.91[JPT][hapmap]
rs7798664	0.91[JPT][hapmap]
rs7808899	0.87[CEU][hapmap];0.91[JPT][hapmap]
rs7809161	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9690434	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs975432	0.86[JPT][hapmap]
rs979499	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs979501	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs995871	0.88[CEU][hapmap];0.86[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949033	chr7:14086106-14860323	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1031041	chr7:14624127-14999201	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv538741	chr7:14624127-14999201	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv887712	chr7:14717872-14829858	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
5	nsv1020722	chr7:14792114-14871907	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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