Variant report

Variant	rs1880551
Chromosome Location	chr7:14789207-14789208
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 97 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:93)

rs_ID	r²[population]
rs10081218	0.94[CEU][hapmap];0.82[JPT][hapmap]
rs10215015	0.85[ASN][1000 genomes]
rs10226709	0.87[CEU][hapmap];0.85[JPT][hapmap]
rs10234845	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10237911	0.87[CEU][hapmap];0.90[JPT][hapmap]
rs10243441	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs10258190	0.88[CEU][hapmap]
rs10273485	1.00[CHB][hapmap];0.80[JPT][hapmap]
rs10273894	1.00[CHB][hapmap]
rs10277367	0.81[JPT][hapmap]
rs12673704	0.94[CEU][hapmap];1.00[CHB][hapmap]
rs12699661	0.80[EUR][1000 genomes]
rs1464821	0.94[CEU][hapmap];0.95[JPT][hapmap];0.80[EUR][1000 genomes]
rs1525090	0.80[EUR][1000 genomes]
rs1525091	0.94[CEU][hapmap];0.95[JPT][hapmap]
rs1525092	0.94[CEU][hapmap];0.95[JPT][hapmap];0.80[EUR][1000 genomes]
rs1525094	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1525095	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1525096	0.82[EUR][1000 genomes]
rs1525097	0.92[CEU][hapmap];0.83[JPT][hapmap];0.81[EUR][1000 genomes]
rs1525098	0.93[CEU][hapmap];0.88[JPT][hapmap];0.82[EUR][1000 genomes]
rs1639230	0.94[CEU][hapmap];0.81[JPT][hapmap]
rs1639233	0.88[CEU][hapmap];0.90[JPT][hapmap]
rs1639234	0.94[CEU][hapmap];0.95[JPT][hapmap]
rs1639236	0.93[CEU][hapmap];0.95[JPT][hapmap];0.82[EUR][1000 genomes]
rs1639237	0.81[EUR][1000 genomes]
rs1639238	1.00[CEU][hapmap];0.95[JPT][hapmap];0.82[EUR][1000 genomes]
rs1639239	0.94[CEU][hapmap];0.95[JPT][hapmap];0.82[EUR][1000 genomes]
rs1639240	0.94[CEU][hapmap];0.95[JPT][hapmap];0.82[EUR][1000 genomes]
rs1639241	0.94[CEU][hapmap];0.95[JPT][hapmap];0.82[EUR][1000 genomes]
rs17168405	0.94[CEU][hapmap];0.80[EUR][1000 genomes]
rs1723221	0.94[CEU][hapmap];0.86[JPT][hapmap]
rs1723223	0.80[EUR][1000 genomes]
rs1723224	0.80[EUR][1000 genomes]
rs1723225	0.80[EUR][1000 genomes]
rs1723226	0.94[CEU][hapmap];0.85[JPT][hapmap];0.80[EUR][1000 genomes]
rs1723227	0.80[EUR][1000 genomes]
rs1723228	0.80[EUR][1000 genomes]
rs1723229	0.94[CEU][hapmap];0.91[JPT][hapmap];0.80[EUR][1000 genomes]
rs1723230	0.94[CEU][hapmap];0.90[JPT][hapmap];0.80[EUR][1000 genomes]
rs1723231	0.94[CEU][hapmap];0.95[JPT][hapmap];0.80[EUR][1000 genomes]
rs1723232	0.94[CEU][hapmap];0.95[JPT][hapmap];0.80[EUR][1000 genomes]
rs1723233	0.94[CEU][hapmap];0.90[JPT][hapmap];0.82[EUR][1000 genomes]
rs1723234	0.93[CEU][hapmap];0.95[JPT][hapmap]
rs1723235	0.92[CEU][hapmap];0.95[JPT][hapmap];0.82[EUR][1000 genomes]
rs1723236	0.94[CEU][hapmap];0.95[JPT][hapmap];0.82[EUR][1000 genomes]
rs1723237	0.93[CEU][hapmap];0.95[JPT][hapmap]
rs1723238	0.87[CEU][hapmap];0.95[JPT][hapmap]
rs1723239	0.94[CEU][hapmap];0.82[EUR][1000 genomes]
rs1723244	0.94[CEU][hapmap];0.95[JPT][hapmap];0.82[EUR][1000 genomes]
rs1723245	0.94[CEU][hapmap];0.95[JPT][hapmap];0.82[EUR][1000 genomes]
rs1723246	0.94[CEU][hapmap];0.95[JPT][hapmap];0.82[EUR][1000 genomes]
rs1723247	0.94[CEU][hapmap];0.95[JPT][hapmap];0.84[EUR][1000 genomes]
rs1723248	0.94[CEU][hapmap];0.90[JPT][hapmap];0.81[EUR][1000 genomes]
rs1723250	0.93[CEU][hapmap];0.90[JPT][hapmap];0.81[EUR][1000 genomes]
rs1723251	0.82[EUR][1000 genomes]
rs1723252	0.82[EUR][1000 genomes]
rs1723255	0.94[CEU][hapmap];0.90[JPT][hapmap];0.82[EUR][1000 genomes]
rs1723256	0.82[EUR][1000 genomes]
rs1880549	0.94[CEU][hapmap];0.86[JPT][hapmap];0.82[EUR][1000 genomes]
rs1880552	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1880553	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1981680	0.81[JPT][hapmap]
rs2098145	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2191477	0.94[CEU][hapmap];0.82[JPT][hapmap];0.80[EUR][1000 genomes]
rs2358067	0.93[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4518556	0.94[CEU][hapmap];0.95[JPT][hapmap];0.80[EUR][1000 genomes]
rs4632953	0.94[CEU][hapmap];0.91[JPT][hapmap];0.80[EUR][1000 genomes]
rs4719419	0.94[CEU][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs4721361	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4721364	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4721368	0.87[CEU][hapmap];0.95[JPT][hapmap];0.82[EUR][1000 genomes]
rs5014691	0.81[JPT][hapmap]
rs6461133	0.81[JPT][hapmap]
rs6946940	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6947133	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6957593	1.00[CHB][hapmap];0.95[JPT][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6967001	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs6977546	0.88[JPT][hapmap]
rs714980	0.94[CEU][hapmap]
rs7456390	0.81[JPT][hapmap]
rs7779072	0.82[JPT][hapmap]
rs7782994	0.82[JPT][hapmap]
rs7786354	0.80[EUR][1000 genomes]
rs7789633	0.94[CEU][hapmap]
rs7796443	1.00[CHB][hapmap];0.81[JPT][hapmap]
rs7799347	0.81[EUR][1000 genomes]
rs7808899	0.94[CEU][hapmap]
rs7809161	0.94[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9690434	1.00[CHB][hapmap]
rs979499	0.94[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs979501	0.93[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs995871	0.94[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949033	chr7:14086106-14860323	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1031041	chr7:14624127-14999201	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv538741	chr7:14624127-14999201	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv887712	chr7:14717872-14829858	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:14784400-14789400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr7:14785800-14792200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr7:14787400-14792200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr7:14787400-14801400	Weak transcription	Brain Cingulate Gyrus	brain
5	chr7:14787800-14792000	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr7:14788200-14789600	Enhancers	HUVEC	blood vessel
7	chr7:14788200-14793600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr7:14788400-14794200	Weak transcription	HMEC	breast
9	chr7:14788600-14793800	Weak transcription	Osteobl	bone
10	chr7:14788600-14794400	Weak transcription	NHDF-Ad	bronchial
11	chr7:14788800-14793600	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr7:14789000-14791000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr7:14789200-14789400	Enhancers	Brain Germinal Matrix	brain

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