Variant report

Variant	rs10273894
Chromosome Location	chr7:14830192-14830193
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10215015	0.95[ASN][1000 genomes]
rs10232210	0.80[EUR][1000 genomes]
rs10234845	0.83[ASN][1000 genomes]
rs10243441	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap]
rs10253171	0.95[CEU][hapmap];0.90[JPT][hapmap];0.81[EUR][1000 genomes]
rs10258190	0.90[JPT][hapmap]
rs10273485	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap]
rs10277367	0.90[CEU][hapmap];0.84[JPT][hapmap]
rs10280027	0.95[CEU][hapmap];0.90[JPT][hapmap]
rs10487779	0.90[JPT][hapmap]
rs1079946	0.86[EUR][1000 genomes]
rs1079947	0.86[EUR][1000 genomes]
rs1120408	0.95[CEU][hapmap];0.90[JPT][hapmap];0.86[EUR][1000 genomes]
rs1120409	0.95[CEU][hapmap];0.90[JPT][hapmap];0.86[EUR][1000 genomes]
rs12673704	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs1525094	1.00[CHB][hapmap]
rs1525095	1.00[CHB][hapmap]
rs1639230	0.84[JPT][hapmap]
rs17168405	0.85[JPT][hapmap]
rs1723221	0.85[JPT][hapmap]
rs1723230	0.84[JPT][hapmap]
rs1880551	1.00[CHB][hapmap]
rs1880553	1.00[CHB][hapmap];0.81[JPT][hapmap]
rs1981680	0.95[CEU][hapmap];0.84[JPT][hapmap];0.82[EUR][1000 genomes]
rs2098145	1.00[CHB][hapmap]
rs2109497	0.95[CEU][hapmap];0.90[JPT][hapmap];0.86[EUR][1000 genomes]
rs2191480	0.95[CEU][hapmap];0.90[JPT][hapmap];0.86[EUR][1000 genomes]
rs2358067	1.00[CHB][hapmap];0.84[JPT][hapmap];0.86[ASN][1000 genomes]
rs4632953	0.80[JPT][hapmap]
rs4721376	0.95[CEU][hapmap];0.95[JPT][hapmap];0.80[EUR][1000 genomes]
rs5014691	0.90[CEU][hapmap];0.84[JPT][hapmap]
rs6461129	0.86[EUR][1000 genomes]
rs6461133	0.95[JPT][hapmap]
rs6942721	0.90[CEU][hapmap];0.90[JPT][hapmap]
rs6957593	1.00[CHB][hapmap]
rs6967001	0.84[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.96[YRI][hapmap]
rs714980	0.90[JPT][hapmap]
rs7456390	0.95[JPT][hapmap]
rs7458312	0.81[EUR][1000 genomes]
rs7779072	0.90[JPT][hapmap]
rs7782994	0.90[CEU][hapmap];0.90[JPT][hapmap]
rs7789696	0.90[CEU][hapmap];0.90[JPT][hapmap]
rs7796443	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs7798664	0.90[JPT][hapmap]
rs7808899	0.90[JPT][hapmap]
rs7809161	1.00[CHB][hapmap]
rs9690434	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs975432	0.95[CEU][hapmap];0.95[JPT][hapmap]
rs979499	1.00[CHB][hapmap];0.80[JPT][hapmap];0.86[ASN][1000 genomes]
rs979501	1.00[CHB][hapmap];0.80[JPT][hapmap];0.86[ASN][1000 genomes]
rs995871	0.95[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949033	chr7:14086106-14860323	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1031041	chr7:14624127-14999201	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv538741	chr7:14624127-14999201	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1020722	chr7:14792114-14871907	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1024192	chr7:14825622-14850257	Enhancers Active TSS Flanking Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links