Variant report

Variant	rs7789696
Chromosome Location	chr7:14842942-14842943
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 110 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:105)

rs_ID	r²[population]
rs10081218	0.96[CHB][hapmap];0.91[JPT][hapmap];0.80[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs10215697	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs10226709	0.91[CHB][hapmap];0.91[JPT][hapmap];0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs10232210	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10237911	0.91[CHB][hapmap]
rs10243441	0.90[CEU][hapmap];0.86[JPT][hapmap]
rs10253171	0.95[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10258190	0.96[CHB][hapmap];1.00[JPT][hapmap]
rs10273485	0.90[CEU][hapmap];0.86[JPT][hapmap]
rs10273894	0.90[CEU][hapmap];0.90[JPT][hapmap]
rs10277367	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10280027	0.95[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs10487779	0.80[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs1079946	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1079947	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1120408	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1120409	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11972669	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12673704	0.91[JPT][hapmap]
rs12699661	0.80[AMR][1000 genomes]
rs1464821	0.91[CHB][hapmap];0.82[JPT][hapmap];0.80[AMR][1000 genomes]
rs1525090	0.81[ASN][1000 genomes]
rs1525091	0.95[CHB][hapmap];0.82[JPT][hapmap];0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs1525092	0.96[CHB][hapmap];0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs1525097	0.95[CHB][hapmap]
rs1525098	0.85[CHB][hapmap];0.84[JPT][hapmap]
rs1639230	0.95[CHB][hapmap];0.86[JPT][hapmap]
rs1639233	0.96[CHB][hapmap]
rs1639234	0.95[CHB][hapmap];0.82[JPT][hapmap]
rs1639236	0.95[CHB][hapmap];0.80[AMR][1000 genomes]
rs1639238	0.95[CHB][hapmap];0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs1639239	0.95[CHB][hapmap];0.82[JPT][hapmap];0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs1639240	0.96[CHB][hapmap];0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs1639241	0.96[CHB][hapmap];0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs17168405	0.95[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1723221	0.95[CHB][hapmap];0.87[JPT][hapmap]
rs1723223	0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs1723224	0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs1723225	0.80[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs1723226	0.95[CHB][hapmap];0.82[JPT][hapmap];0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs1723227	0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs1723228	0.81[ASN][1000 genomes]
rs1723229	0.95[CHB][hapmap];0.83[JPT][hapmap];0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs1723230	0.95[CHB][hapmap];0.86[JPT][hapmap];0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs1723231	0.95[CHB][hapmap];0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs1723232	0.95[CHB][hapmap];0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs1723233	0.95[CHB][hapmap];0.81[JPT][hapmap];0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs1723234	0.96[CHB][hapmap];0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs1723235	0.95[CHB][hapmap];0.80[AMR][1000 genomes]
rs1723236	0.95[CHB][hapmap];0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs1723237	0.91[CHB][hapmap];0.80[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs1723238	0.95[CHB][hapmap];0.80[ASN][1000 genomes]
rs1723239	0.80[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs1723244	0.96[CHB][hapmap]
rs1723245	0.96[CHB][hapmap];0.80[AMR][1000 genomes]
rs1723246	0.96[CHB][hapmap];0.80[AMR][1000 genomes]
rs1723247	0.96[CHB][hapmap]
rs1723248	0.96[CHB][hapmap];0.81[AMR][1000 genomes]
rs1723250	0.95[CHB][hapmap]
rs1723255	0.87[CHB][hapmap];0.80[AMR][1000 genomes]
rs1880549	0.96[CHB][hapmap];0.81[ASN][1000 genomes]
rs1981680	0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2012289	0.80[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2109497	0.95[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2191477	0.96[CHB][hapmap];0.91[JPT][hapmap];0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2191480	0.95[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2358067	0.86[JPT][hapmap]
rs2358069	0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs28610468	0.94[ASN][1000 genomes]
rs4518556	0.96[CHB][hapmap];0.82[JPT][hapmap];0.80[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs4632953	0.96[CHB][hapmap];0.83[JPT][hapmap];0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs4719419	0.96[CHB][hapmap];0.81[ASN][1000 genomes]
rs4719425	1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs4721368	0.95[CHB][hapmap];0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs4721376	0.95[CEU][hapmap];0.96[CHB][hapmap];0.95[JPT][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs5014691	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6461129	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6461133	0.80[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.85[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs6461135	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs67104645	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6942721	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs6952066	0.84[ASN][1000 genomes]
rs6967001	0.86[JPT][hapmap]
rs6976200	0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs6977546	0.94[CHB][hapmap]
rs714980	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs7456390	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs7458312	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs766366	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs7776924	0.95[CHB][hapmap];0.91[JPT][hapmap];0.85[ASN][1000 genomes]
rs7779072	0.80[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7782994	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7786354	0.84[ASN][1000 genomes]
rs7789633	0.95[CHB][hapmap];0.91[JPT][hapmap];0.80[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7796443	0.90[CEU][hapmap];0.91[JPT][hapmap]
rs7798664	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs7799347	0.80[AMR][1000 genomes]
rs7808899	0.95[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs9690434	0.90[CEU][hapmap];0.90[JPT][hapmap]
rs975432	0.95[CEU][hapmap];0.96[CHB][hapmap];0.95[JPT][hapmap]
rs979498	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs979499	0.83[JPT][hapmap]
rs979501	0.83[JPT][hapmap]
rs982707	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs995871	0.96[CHB][hapmap];0.95[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949033	chr7:14086106-14860323	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1031041	chr7:14624127-14999201	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv538741	chr7:14624127-14999201	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1020722	chr7:14792114-14871907	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1024192	chr7:14825622-14850257	Enhancers Active TSS Flanking Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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