Variant report

Variant	rs10280027
Chromosome Location	chr7:14836444-14836445
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 107 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:102)

rs_ID	r²[population]
rs10081218	1.00[CHB][hapmap];0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs10215697	0.91[ASN][1000 genomes]
rs10226709	0.95[CHB][hapmap];0.91[JPT][hapmap];0.84[ASN][1000 genomes]
rs10232210	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10237911	0.95[CHB][hapmap]
rs10243441	0.95[CEU][hapmap];0.86[JPT][hapmap]
rs10253171	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10258190	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10273485	0.95[CEU][hapmap];0.86[JPT][hapmap]
rs10273894	0.95[CEU][hapmap];0.90[JPT][hapmap]
rs10277367	0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10487779	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1079946	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1079947	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1120408	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1120409	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11972669	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12673704	0.91[JPT][hapmap]
rs1464821	0.95[CHB][hapmap];0.82[JPT][hapmap]
rs1525090	0.82[ASN][1000 genomes]
rs1525091	1.00[CHB][hapmap];0.82[JPT][hapmap];0.82[ASN][1000 genomes]
rs1525092	1.00[CHB][hapmap];0.82[ASN][1000 genomes]
rs1525097	1.00[CHB][hapmap]
rs1525098	0.90[CHB][hapmap];0.84[JPT][hapmap]
rs1639230	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs1639233	1.00[CHB][hapmap]
rs1639234	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs1639236	1.00[CHB][hapmap]
rs1639238	1.00[CHB][hapmap];0.82[ASN][1000 genomes]
rs1639239	1.00[CHB][hapmap];0.82[JPT][hapmap];0.82[ASN][1000 genomes]
rs1639240	1.00[CHB][hapmap];0.82[ASN][1000 genomes]
rs1639241	1.00[CHB][hapmap];0.82[ASN][1000 genomes]
rs17168405	1.00[CHB][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs1723221	1.00[CHB][hapmap];0.87[JPT][hapmap]
rs1723223	0.83[ASN][1000 genomes]
rs1723224	0.83[ASN][1000 genomes]
rs1723225	0.81[ASN][1000 genomes]
rs1723226	1.00[CHB][hapmap];0.82[JPT][hapmap];0.82[ASN][1000 genomes]
rs1723227	0.82[ASN][1000 genomes]
rs1723228	0.82[ASN][1000 genomes]
rs1723229	1.00[CHB][hapmap];0.83[JPT][hapmap];0.83[ASN][1000 genomes]
rs1723230	1.00[CHB][hapmap];0.86[JPT][hapmap];0.83[ASN][1000 genomes]
rs1723231	1.00[CHB][hapmap];0.82[ASN][1000 genomes]
rs1723232	1.00[CHB][hapmap];0.82[ASN][1000 genomes]
rs1723233	1.00[CHB][hapmap];0.81[JPT][hapmap];0.82[ASN][1000 genomes]
rs1723234	1.00[CHB][hapmap];0.82[ASN][1000 genomes]
rs1723235	1.00[CHB][hapmap];0.81[ASN][1000 genomes]
rs1723236	1.00[CHB][hapmap];0.82[ASN][1000 genomes]
rs1723237	0.95[CHB][hapmap];0.81[ASN][1000 genomes]
rs1723238	1.00[CHB][hapmap];0.81[ASN][1000 genomes]
rs1723239	0.81[ASN][1000 genomes]
rs1723244	1.00[CHB][hapmap]
rs1723245	1.00[CHB][hapmap]
rs1723246	1.00[CHB][hapmap]
rs1723247	1.00[CHB][hapmap]
rs1723248	1.00[CHB][hapmap]
rs1723250	1.00[CHB][hapmap]
rs1723255	0.91[CHB][hapmap]
rs1880549	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs1981680	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2012289	0.86[ASN][1000 genomes]
rs2109497	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2191477	1.00[CHB][hapmap];0.91[JPT][hapmap];0.84[ASN][1000 genomes]
rs2191480	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2358067	0.86[JPT][hapmap]
rs2358069	0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs28610468	0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4518556	1.00[CHB][hapmap];0.82[JPT][hapmap];0.85[ASN][1000 genomes]
rs4632953	1.00[CHB][hapmap];0.83[JPT][hapmap];0.83[ASN][1000 genomes]
rs4719419	1.00[CHB][hapmap];0.82[ASN][1000 genomes]
rs4721368	1.00[CHB][hapmap];0.82[ASN][1000 genomes]
rs4721376	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs5014691	0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6461129	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6461133	0.84[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs6461135	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs67104645	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6942721	0.95[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs6948538	1.00[YRI][hapmap]
rs6952066	0.85[ASN][1000 genomes]
rs6967001	0.86[JPT][hapmap]
rs6976200	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs6977546	1.00[CHB][hapmap]
rs714980	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7456390	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs7458312	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7776924	1.00[CHB][hapmap];0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs7779072	0.84[CEU][hapmap];0.86[CHB][hapmap];0.91[JPT][hapmap];0.84[YRI][hapmap];0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7782994	0.95[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7786354	0.85[ASN][1000 genomes]
rs7789633	1.00[CHB][hapmap];0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs7789696	0.95[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs7796443	0.95[CEU][hapmap];0.91[JPT][hapmap]
rs7798664	0.85[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7808899	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs9690434	0.95[CEU][hapmap];0.90[JPT][hapmap]
rs975432	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.94[YRI][hapmap]
rs979498	0.85[ASN][1000 genomes]
rs979499	0.83[JPT][hapmap]
rs979501	0.83[JPT][hapmap]
rs982707	0.86[ASN][1000 genomes]
rs995871	1.00[CHB][hapmap];0.95[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949033	chr7:14086106-14860323	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1031041	chr7:14624127-14999201	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv538741	chr7:14624127-14999201	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1020722	chr7:14792114-14871907	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1024192	chr7:14825622-14850257	Enhancers Active TSS Flanking Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links