Variant report

Variant	rs7796443
Chromosome Location	chr7:14832091-14832092
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 94 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:89)

rs_ID	r²[population]
rs10081218	0.85[JPT][hapmap]
rs10215015	0.95[ASN][1000 genomes]
rs10226709	0.81[JPT][hapmap]
rs10232210	0.81[EUR][1000 genomes]
rs10234845	0.83[ASN][1000 genomes]
rs10243441	0.82[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];0.93[TSI][hapmap];0.96[YRI][hapmap]
rs10253171	0.95[CEU][hapmap];0.95[GIH][hapmap];0.91[JPT][hapmap];0.83[EUR][1000 genomes]
rs10258190	0.91[JPT][hapmap]
rs10273485	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.96[YRI][hapmap]
rs10273894	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs10277367	0.90[CEU][hapmap];0.83[GIH][hapmap];0.86[JPT][hapmap];0.80[EUR][1000 genomes]
rs10280027	0.95[CEU][hapmap];0.91[JPT][hapmap]
rs10487779	0.91[JPT][hapmap]
rs1079946	0.88[EUR][1000 genomes]
rs1079947	0.88[EUR][1000 genomes]
rs1120408	0.95[CEU][hapmap];0.91[GIH][hapmap];0.91[JPT][hapmap];0.86[TSI][hapmap];0.88[EUR][1000 genomes]
rs1120409	0.95[CEU][hapmap];0.91[JPT][hapmap];0.88[EUR][1000 genomes]
rs12673704	1.00[CHB][hapmap];0.91[JPT][hapmap]
rs1464821	0.82[JPT][hapmap]
rs1525091	0.82[JPT][hapmap]
rs1525092	0.82[JPT][hapmap]
rs1525094	1.00[CHB][hapmap];0.95[CHD][hapmap]
rs1525095	1.00[CHB][hapmap];0.95[CHD][hapmap]
rs1525098	0.82[JPT][hapmap]
rs1639230	0.86[JPT][hapmap]
rs1639234	0.82[JPT][hapmap]
rs1639236	0.81[JPT][hapmap]
rs1639238	0.82[JPT][hapmap]
rs1639239	0.82[JPT][hapmap]
rs1639240	0.82[JPT][hapmap]
rs1639241	0.82[JPT][hapmap]
rs17168405	0.91[JPT][hapmap]
rs1723221	0.91[JPT][hapmap]
rs1723226	0.82[JPT][hapmap]
rs1723229	0.86[JPT][hapmap]
rs1723230	0.86[JPT][hapmap]
rs1723231	0.82[JPT][hapmap]
rs1723232	0.81[JPT][hapmap]
rs1723233	0.84[JPT][hapmap]
rs1723234	0.82[JPT][hapmap]
rs1723235	0.80[JPT][hapmap]
rs1723236	0.81[JPT][hapmap]
rs1723237	0.81[JPT][hapmap]
rs1723238	0.81[JPT][hapmap]
rs1723244	0.81[JPT][hapmap]
rs1723245	0.81[JPT][hapmap]
rs1723246	0.81[JPT][hapmap]
rs1723247	0.81[JPT][hapmap]
rs1880549	0.82[JPT][hapmap]
rs1880551	1.00[CHB][hapmap];0.81[JPT][hapmap];0.80[ASN][1000 genomes]
rs1880552	0.80[ASN][1000 genomes]
rs1880553	1.00[CHB][hapmap];0.95[CHD][hapmap];0.83[JPT][hapmap];0.80[ASN][1000 genomes]
rs1981680	0.95[CEU][hapmap];0.89[GIH][hapmap];0.86[JPT][hapmap];0.83[EUR][1000 genomes]
rs2098145	1.00[CHB][hapmap];0.95[CHD][hapmap]
rs2109497	0.95[CEU][hapmap];0.91[JPT][hapmap];0.88[EUR][1000 genomes]
rs2191477	0.86[JPT][hapmap]
rs2191480	0.95[CEU][hapmap];0.91[JPT][hapmap];0.88[EUR][1000 genomes]
rs2358067	1.00[CHB][hapmap];0.95[CHD][hapmap];0.86[JPT][hapmap];0.86[ASN][1000 genomes]
rs4518556	0.85[JPT][hapmap]
rs4632953	0.86[JPT][hapmap]
rs4719419	0.81[JPT][hapmap]
rs4721361	0.80[ASN][1000 genomes]
rs4721364	0.80[ASN][1000 genomes]
rs4721368	0.81[JPT][hapmap]
rs4721376	0.95[CEU][hapmap];0.95[JPT][hapmap];0.82[EUR][1000 genomes]
rs5014691	0.90[CEU][hapmap];0.89[GIH][hapmap];0.86[JPT][hapmap]
rs6461129	0.88[EUR][1000 genomes]
rs6461133	0.95[JPT][hapmap]
rs6942721	0.90[CEU][hapmap];0.91[JPT][hapmap]
rs6946940	0.80[ASN][1000 genomes]
rs6947133	0.80[ASN][1000 genomes]
rs6957593	1.00[CHB][hapmap];0.95[CHD][hapmap];0.80[ASN][1000 genomes]
rs6967001	0.84[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.85[MEX][hapmap];1.00[YRI][hapmap]
rs714980	0.91[JPT][hapmap]
rs7456390	0.95[JPT][hapmap]
rs7458312	0.82[EUR][1000 genomes]
rs7776924	0.81[JPT][hapmap]
rs7779072	0.91[JPT][hapmap]
rs7782994	0.90[CEU][hapmap];0.91[JPT][hapmap]
rs7789633	0.81[JPT][hapmap]
rs7789696	0.90[CEU][hapmap];0.91[JPT][hapmap]
rs7798664	0.91[JPT][hapmap]
rs7808899	0.91[JPT][hapmap]
rs7809161	1.00[CHB][hapmap];0.80[ASN][1000 genomes]
rs9690434	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs975432	0.95[CEU][hapmap];0.95[JPT][hapmap]
rs979499	1.00[CHB][hapmap];0.86[JPT][hapmap];0.86[ASN][1000 genomes]
rs979501	1.00[CHB][hapmap];0.86[JPT][hapmap];0.86[ASN][1000 genomes]
rs995871	0.95[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949033	chr7:14086106-14860323	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1031041	chr7:14624127-14999201	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv538741	chr7:14624127-14999201	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1020722	chr7:14792114-14871907	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1024192	chr7:14825622-14850257	Enhancers Active TSS Flanking Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7796443	DGKB	cis	cerebellum	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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