Variant report

Variant	rs1525095
Chromosome Location	chr7:14778015-14778016
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SPI1	chr7:14777664-14778160	HL-60	blood:	n/a	n/a

Variant related genes	Relation type
DGKB	TF binding region

Extended variants
information (count: 86 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:82)

rs_ID	r²[population]
rs10081218	0.93[CEU][hapmap]
rs10215015	0.84[ASN][1000 genomes]
rs10226709	0.87[CEU][hapmap]
rs10234845	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10237911	0.87[CEU][hapmap];0.85[GIH][hapmap];0.91[JPT][hapmap]
rs10243441	1.00[CHB][hapmap];0.95[CHD][hapmap];0.83[JPT][hapmap]
rs10258190	0.87[CEU][hapmap]
rs10273485	1.00[CHB][hapmap];0.81[JPT][hapmap]
rs10273894	1.00[CHB][hapmap]
rs10807775	0.82[EUR][1000 genomes]
rs12154918	0.81[EUR][1000 genomes]
rs12673704	0.93[CEU][hapmap];1.00[CHB][hapmap]
rs12699660	0.82[EUR][1000 genomes]
rs1464821	0.94[CEU][hapmap];0.83[GIH][hapmap];0.87[JPT][hapmap]
rs1525091	0.94[CEU][hapmap];0.81[GIH][hapmap];0.87[JPT][hapmap]
rs1525092	0.94[CEU][hapmap];0.87[JPT][hapmap]
rs1525094	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1525097	0.92[CEU][hapmap];0.84[JPT][hapmap]
rs1525098	0.93[CEU][hapmap];0.89[JPT][hapmap]
rs1639230	0.94[CEU][hapmap]
rs1639233	0.87[CEU][hapmap];0.91[JPT][hapmap]
rs1639234	0.94[CEU][hapmap];0.81[GIH][hapmap];0.87[JPT][hapmap]
rs1639236	0.93[CEU][hapmap];0.91[JPT][hapmap]
rs1639238	1.00[CEU][hapmap];0.87[JPT][hapmap]
rs1639239	0.94[CEU][hapmap];0.81[GIH][hapmap];0.87[JPT][hapmap]
rs1639240	0.94[CEU][hapmap];0.87[JPT][hapmap]
rs1639241	0.93[CEU][hapmap];0.87[JPT][hapmap]
rs17168405	0.94[CEU][hapmap]
rs1723221	0.94[CEU][hapmap]
rs1723226	0.94[CEU][hapmap];0.81[GIH][hapmap];0.87[JPT][hapmap]
rs1723229	0.93[CEU][hapmap];0.82[JPT][hapmap]
rs1723230	0.94[CEU][hapmap];0.81[GIH][hapmap];0.83[JPT][hapmap]
rs1723231	0.94[CEU][hapmap];0.87[JPT][hapmap]
rs1723232	0.94[CEU][hapmap];0.86[JPT][hapmap]
rs1723233	0.94[CEU][hapmap];0.85[JPT][hapmap]
rs1723234	0.93[CEU][hapmap];0.87[JPT][hapmap]
rs1723235	0.92[CEU][hapmap];0.86[JPT][hapmap]
rs1723236	0.93[CEU][hapmap];0.86[JPT][hapmap]
rs1723237	0.93[CEU][hapmap];0.86[JPT][hapmap]
rs1723238	0.87[CEU][hapmap];0.86[JPT][hapmap]
rs1723239	0.94[CEU][hapmap]
rs1723244	0.94[CEU][hapmap];0.86[JPT][hapmap]
rs1723245	0.94[CEU][hapmap];0.86[JPT][hapmap]
rs1723246	0.93[CEU][hapmap];0.86[JPT][hapmap]
rs1723247	0.93[CEU][hapmap];0.86[JPT][hapmap]
rs1723248	0.94[CEU][hapmap];0.91[JPT][hapmap]
rs1723250	0.93[CEU][hapmap];0.90[JPT][hapmap]
rs1723255	0.94[CEU][hapmap];0.90[JPT][hapmap]
rs1880549	0.94[CEU][hapmap];0.87[JPT][hapmap]
rs1880550	0.81[EUR][1000 genomes]
rs1880551	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1880552	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1880553	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.88[MEX][hapmap];0.87[TSI][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2091258	0.81[EUR][1000 genomes]
rs2098145	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];0.85[YRI][hapmap];0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2191477	0.94[CEU][hapmap]
rs2358067	0.93[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.95[GIH][hapmap];0.83[JPT][hapmap];0.81[TSI][hapmap];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2884369	0.82[EUR][1000 genomes]
rs4518556	0.94[CEU][hapmap];0.86[JPT][hapmap]
rs4632953	0.94[CEU][hapmap];0.83[JPT][hapmap]
rs4719419	0.94[CEU][hapmap];0.91[JPT][hapmap]
rs4721361	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4721362	0.82[EUR][1000 genomes]
rs4721363	0.82[EUR][1000 genomes]
rs4721364	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4721368	0.86[CEU][hapmap];0.86[JPT][hapmap]
rs6946940	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6947133	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6957593	1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6967001	1.00[CHB][hapmap];0.83[JPT][hapmap]
rs6977546	0.89[JPT][hapmap]
rs714980	0.94[CEU][hapmap];0.87[GIH][hapmap]
rs7783453	0.83[EUR][1000 genomes]
rs7789633	0.94[CEU][hapmap];0.83[GIH][hapmap]
rs7796443	1.00[CHB][hapmap];0.95[CHD][hapmap]
rs7808899	0.94[CEU][hapmap];0.83[GIH][hapmap]
rs7809161	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs957032	0.81[EUR][1000 genomes]
rs9690434	1.00[CHB][hapmap]
rs979499	0.93[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs979501	0.93[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs995871	0.94[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949033	chr7:14086106-14860323	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1031041	chr7:14624127-14999201	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv538741	chr7:14624127-14999201	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv887712	chr7:14717872-14829858	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1525095	DGKB	cis	cerebellum	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:14775000-14779600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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