Variant report

Variant	rs28611362
Chromosome Location	chr4:121642130-121642131
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10003374	0.89[ASN][1000 genomes]
rs10005334	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10023476	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10023764	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10026006	0.89[ASN][1000 genomes]
rs10049714	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1496275	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1511310	0.89[ASN][1000 genomes]
rs17051233	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17051249	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17051257	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17051264	0.89[ASN][1000 genomes]
rs28384319	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28532205	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28557150	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28564955	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28752050	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56998648	0.89[ASN][1000 genomes]
rs57391956	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs57504308	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs58312461	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs58663639	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs58733140	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs59315146	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs59788809	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs60012498	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs60670974	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60937110	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61055437	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6814313	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6826221	0.89[ASN][1000 genomes]
rs73845482	0.89[ASN][1000 genomes]
rs7681445	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879852	chr4:121108734-121768496	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv998094	chr4:121504565-122374203	Weak transcription Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv1004485	chr4:121542992-121716769	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv916737	chr4:121589793-121748847	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv461634	chr4:121623057-121765527	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv595334	chr4:121623057-121765527	Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:121620800-121654400	Weak transcription	Left Ventricle	heart
2	chr4:121620800-121671400	Weak transcription	Pancreas	Pancrea
3	chr4:121625600-121657600	Weak transcription	Primary neutrophils fromperipheralblood	blood
4	chr4:121626000-121658200	Weak transcription	Aorta	Aorta
5	chr4:121629600-121643400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr4:121630000-121671400	Weak transcription	Ovary	ovary
7	chr4:121631800-121642200	Weak transcription	Fetal Lung	lung
8	chr4:121634000-121642400	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr4:121636000-121643600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr4:121640600-121646600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr4:121641200-121643200	Enhancers	Fetal Heart	heart
12	chr4:121641200-121670400	Weak transcription	Fetal Muscle Leg	muscle
13	chr4:121641400-121642800	Enhancers	Fetal Stomach	stomach
14	chr4:121641400-121645600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr4:121641400-121669600	Weak transcription	Fetal Intestine Small	intestine
16	chr4:121641600-121647000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr4:121641600-121652800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr4:121641800-121647200	Weak transcription	Fetal Thymus	thymus
19	chr4:121642000-121644600	Enhancers	HUES6 Cell Line	embryonic stem cell

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