Variant report

Variant	rs28752050
Chromosome Location	chr4:121629760-121629761
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10003374	0.89[ASN][1000 genomes]
rs10005334	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10023476	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10023764	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10026006	0.89[ASN][1000 genomes]
rs10049714	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1496275	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1511310	0.89[ASN][1000 genomes]
rs17051233	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17051249	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17051257	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17051264	0.89[ASN][1000 genomes]
rs28384319	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28532205	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28557150	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28564955	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28611362	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56998648	0.89[ASN][1000 genomes]
rs57391956	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs57504308	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs58312461	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs58663639	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs58733140	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs59315146	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs59788809	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs60012498	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs60670974	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60937110	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61055437	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6814313	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6826221	0.89[ASN][1000 genomes]
rs73845482	0.89[ASN][1000 genomes]
rs7681445	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879852	chr4:121108734-121768496	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv998094	chr4:121504565-122374203	Weak transcription Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv1004485	chr4:121542992-121716769	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv916737	chr4:121589793-121748847	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv461634	chr4:121623057-121765527	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv595334	chr4:121623057-121765527	Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:121616800-121631000	Weak transcription	NHEK	skin
2	chr4:121617600-121630200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr4:121618600-121630600	Weak transcription	Fetal Lung	lung
4	chr4:121620800-121637600	Weak transcription	Psoas Muscle	Psoas
5	chr4:121620800-121654400	Weak transcription	Left Ventricle	heart
6	chr4:121620800-121671400	Weak transcription	Pancreas	Pancrea
7	chr4:121621000-121630600	Weak transcription	Fetal Heart	heart
8	chr4:121625600-121657600	Weak transcription	Primary neutrophils fromperipheralblood	blood
9	chr4:121625800-121630800	Weak transcription	Colon Smooth Muscle	Colon
10	chr4:121626000-121630600	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr4:121626000-121658200	Weak transcription	Aorta	Aorta
12	chr4:121626800-121631400	Weak transcription	Right Ventricle	heart
13	chr4:121629000-121630000	Strong transcription	Ovary	ovary
14	chr4:121629600-121643400	Weak transcription	Breast Myoepithelial Primary Cells	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links