Variant report

Variant	rs61055437
Chromosome Location	chr4:121673774-121673775
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10003374	1.00[ASN][1000 genomes]
rs10005334	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10023476	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10023764	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10026006	1.00[ASN][1000 genomes]
rs10049714	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1496275	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1511310	1.00[ASN][1000 genomes]
rs17051233	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17051249	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17051257	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17051264	1.00[ASN][1000 genomes]
rs28384319	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28532205	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28557150	1.00[EUR][1000 genomes]
rs28564955	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28611362	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28752050	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56998648	1.00[ASN][1000 genomes]
rs57391956	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57504308	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58312461	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58663639	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58733140	1.00[EUR][1000 genomes]
rs59315146	0.89[ASN][1000 genomes]
rs59788809	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60012498	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60937110	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6814313	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6826221	1.00[ASN][1000 genomes]
rs73845482	1.00[ASN][1000 genomes]
rs7681445	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879852	chr4:121108734-121768496	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv998094	chr4:121504565-122374203	Weak transcription Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv1004485	chr4:121542992-121716769	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv916737	chr4:121589793-121748847	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv461634	chr4:121623057-121765527	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv595334	chr4:121623057-121765527	Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv1013704	chr4:121657648-121791601	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:121652600-121687000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:121668400-121690400	Weak transcription	Osteobl	bone
3	chr4:121670000-121675000	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr4:121670600-121673800	Weak transcription	Colon Smooth Muscle	Colon
5	chr4:121671000-121675000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr4:121671800-121684200	Weak transcription	Ovary	ovary
7	chr4:121671800-121697000	Weak transcription	Pancreas	Pancrea
8	chr4:121671800-121728600	Weak transcription	Left Ventricle	heart
9	chr4:121672000-121673800	Strong transcription	Primary neutrophils fromperipheralblood	blood
10	chr4:121672000-121676600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr4:121672000-121722400	Weak transcription	Right Ventricle	heart
12	chr4:121672400-121675000	Weak transcription	Fetal Intestine Large	intestine
13	chr4:121672400-121675800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr4:121672400-121676800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr4:121672400-121680800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr4:121672400-121690400	Weak transcription	Lung	lung
17	chr4:121672400-121728800	Weak transcription	Aorta	Aorta
18	chr4:121672400-121728800	Weak transcription	Fetal Stomach	stomach
19	chr4:121672800-121674600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr4:121673000-121674600	Weak transcription	Fetal Intestine Small	intestine
21	chr4:121673000-121675000	Weak transcription	HUES64 Cell Line	embryonic stem cell
22	chr4:121673000-121675000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
23	chr4:121673000-121675000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr4:121673000-121675400	Weak transcription	Stomach Smooth Muscle	stomach
25	chr4:121673000-121678200	Weak transcription	H1 Cell Line	embryonic stem cell
26	chr4:121673000-121690200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr4:121673000-121697200	Weak transcription	Duodenum Smooth Muscle	Duodenum
28	chr4:121673000-121705200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr4:121673000-121722400	Weak transcription	Fetal Muscle Leg	muscle
30	chr4:121673000-121737400	Weak transcription	Fetal Muscle Trunk	muscle
31	chr4:121673200-121675000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
32	chr4:121673200-121685600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr4:121673200-121690400	Weak transcription	Fetal Lung	lung
34	chr4:121673400-121678200	Weak transcription	HUES6 Cell Line	embryonic stem cell
35	chr4:121673400-121690400	Weak transcription	Muscle Satellite Cultured Cells	--
36	chr4:121673600-121692800	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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