Variant report

Variant	rs28615459
Chromosome Location	chr8:122839019-122839020
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10093103	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10505412	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17244386	0.90[EUR][1000 genomes]
rs28373700	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs28377004	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs62525274	0.87[EUR][1000 genomes]
rs62525275	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62525278	0.80[AFR][1000 genomes];0.86[AMR][1000 genomes]

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:122830400-122842200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr8:122831200-122842200	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr8:122834400-122840400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr8:122835600-122842200	Weak transcription	HUVEC	blood vessel
5	chr8:122835800-122842000	Weak transcription	Fetal Lung	lung
6	chr8:122836000-122842000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr8:122838200-122842000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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