Variant report

Variant	rs28624979
Chromosome Location	chr9:140353783-140353784
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr9:140353635-140354148	HepG2	liver:	n/a	n/a
2	UBTF	chr9:140353393-140353807	K562	blood:	n/a	n/a
3	POLR2A	chr9:140353576-140353863	A549	lung:	n/a	n/a
4	TBL1XR1	chr9:140353722-140354108	K562	blood:	n/a	n/a
5	JUND	chr9:140353386-140354460	SK-N-SH	brain:	n/a	n/a
6	MYC	chr9:140353147-140354321	A549	lung:	n/a	chr9:140353724-140353733 chr9:140353888-140353898 chr9:140353379-140353389
7	POLR2A	chr9:140353523-140354170	GM19193	blood:	n/a	n/a
8	TAF1	chr9:140353558-140354031	ECC-1	luminal epithelium:	n/a	n/a
9	SIN3AK20	chr9:140353384-140353892	K562	blood:	n/a	n/a
10	SP1	chr9:140353644-140354113	HepG2	liver:	n/a	chr9:140353932-140353944 chr9:140353933-140353943 chr9:140353934-140353943 chr9:140353933-140353943 chr9:140353933-140353942 chr9:140353929-140353943 chr9:140353934-140353943 chr9:140353932-140353944 chr9:140353895-140353906 chr9:140353844-140353855
11	NFYB	chr9:140353753-140353969	GM12878	blood:	n/a	n/a
12	MAX	chr9:140353046-140354590	K562	blood:	n/a	chr9:140353724-140353733 chr9:140353888-140353898 chr9:140353379-140353389
13	YY1	chr9:140353272-140354081	K562	blood:	n/a	chr9:140353376-140353390 chr9:140353561-140353570 chr9:140353412-140353423 chr9:140353933-140353942 chr9:140353755-140353769
14	HMGN3	chr9:140352990-140354148	K562	blood:	n/a	n/a
15	MAX	chr9:140353529-140354031	H1-hESC	embryonic stem cell:	n/a	chr9:140353724-140353733 chr9:140353888-140353898
16	YY1	chr9:140353393-140353878	H1-hESC	embryonic stem cell:	n/a	chr9:140353561-140353570 chr9:140353412-140353423 chr9:140353755-140353769
17	SIN3AK20	chr9:140353318-140353970	PANC-1	pancreas:	n/a	n/a
18	POLR2A	chr9:140353529-140354120	K562	blood:	n/a	n/a
19	RFX5	chr9:140353692-140354029	HepG2	liver:	n/a	n/a
20	POLR2A	chr9:140353536-140354139	K562	blood:	n/a	n/a
21	HEY1	chr9:140353548-140353973	K562	blood:	n/a	chr9:140353744-140353759 chr9:140353764-140353779
22	SIN3AK20	chr9:140353605-140353862	HepG2	liver:	n/a	n/a
23	ATF2	chr9:140353700-140354020	GM12878	blood:	n/a	n/a
24	STAT1	chr9:140353630-140354039	GM12878	blood:	n/a	n/a
25	ELF1	chr9:140353673-140354055	K562	blood:	n/a	chr9:140353937-140353949
26	CREB1	chr9:140353673-140354102	ECC-1	luminal epithelium:	n/a	n/a
27	TAF1	chr9:140352992-140354076	HepG2	liver:	n/a	n/a
28	POLR2A	chr9:140353459-140354100	Gliobla	brain:	n/a	n/a
29	CREB1	chr9:140353590-140354189	H1-hESC	embryonic stem cell:	n/a	n/a
30	BRCA1	chr9:140353673-140354305	Hela-S3	cervix:	n/a	n/a
31	POLR2A	chr9:140353531-140354172	NB4	blood:	n/a	n/a
32	USF2	chr9:140353767-140354012	H1-hESC	embryonic stem cell:	n/a	chr9:140353887-140353898
33	ETS1	chr9:140353600-140353882	K562	blood:	n/a	n/a
34	USF1	chr9:140353721-140354089	A549	lung:	n/a	chr9:140353759-140353775 chr9:140353733-140353749
35	POLR2A	chr9:140353591-140354012	GM10847	blood:	n/a	n/a
36	HCFC1	chr9:140353566-140354151	K562	blood:	n/a	n/a
37	POLR2A	chr9:140353387-140354146	H1-neurons	neurons:	n/a	n/a
38	BRCA1	chr9:140353715-140353990	HepG2	liver:	n/a	n/a
39	BHLHE40	chr9:140353589-140353958	HepG2	liver:	n/a	chr9:140353759-140353775 chr9:140353733-140353749
40	HA-E2F1	chr9:140353292-140353969	Hela-S3	cervix:	n/a	chr9:140353933-140353942 chr9:140353343-140353352
41	FOXA2	chr9:140353558-140353959	A549	lung:	n/a	n/a
42	POLR2A	chr9:140353265-140354025	HepG2	liver:	n/a	n/a
43	POLR2A	chr9:140353456-140354066	MCF-7	breast:	n/a	n/a
44	ZNF143	chr9:140353718-140354306	Hela-S3	cervix:	n/a	n/a
45	POLR2A	chr9:140353491-140354161	GM18951	blood:	n/a	n/a
46	YY1	chr9:140353340-140353950	K562	blood:	n/a	chr9:140353376-140353390 chr9:140353561-140353570 chr9:140353412-140353423 chr9:140353933-140353942 chr9:140353755-140353769
47	POLR2A	chr9:140353533-140354184	GM19099	blood:	n/a	n/a
48	USF1	chr9:140353723-140354034	SK-N-SH_RA	brain:	n/a	chr9:140353759-140353775 chr9:140353733-140353749
49	POLR2A	chr9:140353546-140354080	K562	blood:	n/a	n/a
50	ZEB1	chr9:140353588-140353860	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr9:139979763..139981414-chr9:140352463..140355092,2	K562	blood:
2	chr9:140335850..140343594-chr9:140351085..140357770,13	MCF-7	breast:
3	chr9:140142023..140145002-chr9:140350817..140354805,3	K562	blood:
4	chr9:140316257..140317769-chr9:140352568..140355064,2	K562	blood:
5	chr2:676897..677660-chr9:140353219..140353959,2	Hela-S3	cervix:
6	chr10:60094527..60095265-chr9:140353554..140354223,2	HCT-116	colon:
7	chr9:140316449..140319245-chr9:140352297..140354187,2	K562	blood:
8	chr9:140352557..140355387-chr9:140371788..140374935,3	MCF-7	breast:
9	chr9:140170010..140175044-chr9:140351008..140355956,5	K562	blood:
10	chr9:140191336..140198265-chr9:140351106..140355775,13	MCF-7	breast:
11	chr9:140315974..140319216-chr9:140351199..140355551,4	MCF-7	breast:
12	chr9:140190600..140200304-chr9:140345387..140357836,26	K562	blood:
13	chr9:140077620..140079519-chr9:140351621..140354134,2	K562	blood:
14	chr9:140325901..140335846-chr9:140346696..140354798,14	K562	blood:
15	chr14:103800123..103800887-chr9:140353475..140354015,2	HCT-116	colon:
16	chr9:140194341..140197966-chr9:140350520..140353803,7	MCF-7	breast:
17	chr9:140193764..140196943-chr9:140350718..140357972,9	K562	blood:
18	chr9:140351004..140356661-chr9:140371273..140378307,10	MCF-7	breast:
19	chr9:140352080..140354787-chr9:140444624..140448715,3	MCF-7	breast:
20	chr9:140081774..140084608-chr9:140352899..140355217,2	MCF-7	breast:
21	chr20:48598836..48600076-chr9:140353139..140354235,3	Hela-S3	cervix:
22	chr1:153939505..153940159-chr9:140353647..140354212,2	HCT-116	colon:
23	chr8:22926114..22926683-chr9:140353022..140354009,2	Hela-S3	cervix:
24	chr9:140188775..140193297-chr9:140352030..140355561,5	K562	blood:
25	chr9:140316974..140319739-chr9:140351873..140353918,3	MCF-7	breast:
26	chr9:140334848..140337277-chr9:140353292..140355105,2	MCF-7	breast:
27	chr9:140352137..140355481-chr9:140359120..140360959,3	MCF-7	breast:
28	chr9:140135678..140137635-chr9:140352214..140353821,2	K562	blood:
29	chr9:140352304..140355788-chr9:140405232..140410099,5	MCF-7	breast:

Variant related genes	Relation type
NSMF	TF binding region
ENSG00000100664	Chromatin interaction
ENSG00000143570	Chromatin interaction
ENSG00000198435	Chromatin interaction
ENSG00000176101	Chromatin interaction
ENSG00000268996	Chromatin interaction
ENSG00000151353	Chromatin interaction
ENSG00000143578	Chromatin interaction
ENSG00000233296	Chromatin interaction
ENSG00000188833	Chromatin interaction
ENSG00000177239	Chromatin interaction
ENSG00000188163	Chromatin interaction
ENSG00000072401	Chromatin interaction
ENSG00000120889	Chromatin interaction
ENSG00000188229	Chromatin interaction
ENSG00000130653	Chromatin interaction
ENSG00000124216	Chromatin interaction
ENSG00000198113	Chromatin interaction
ENSG00000260996	Chromatin interaction
ENSG00000182154	Chromatin interaction
ENSG00000176248	Chromatin interaction
ENSG00000188747	Chromatin interaction
ENSG00000187609	Chromatin interaction

Extended variants
information (count: 88 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10125730	1.00[ASN][1000 genomes]
rs11497274	1.00[ASN][1000 genomes]
rs11534416	1.00[ASN][1000 genomes]
rs11537107	1.00[ASN][1000 genomes]
rs13288421	1.00[ASN][1000 genomes]
rs28412081	1.00[ASN][1000 genomes]
rs28434345	1.00[ASN][1000 genomes]
rs35018943	1.00[ASN][1000 genomes]
rs35799288	1.00[ASN][1000 genomes]
rs55663742	1.00[ASN][1000 genomes]
rs61738892	1.00[ASN][1000 genomes]
rs61747535	1.00[ASN][1000 genomes]
rs6606582	1.00[ASN][1000 genomes]
rs6606583	1.00[ASN][1000 genomes]
rs6606584	1.00[ASN][1000 genomes]
rs7020732	1.00[ASN][1000 genomes]
rs7043278	1.00[ASN][1000 genomes]
rs7048494	1.00[ASN][1000 genomes]
rs72765189	1.00[ASN][1000 genomes]
rs72765199	1.00[ASN][1000 genomes]
rs7388729	1.00[ASN][1000 genomes]
rs7389423	1.00[ASN][1000 genomes]
rs7467896	1.00[ASN][1000 genomes]
rs7847470	1.00[ASN][1000 genomes]
rs7848746	1.00[ASN][1000 genomes]
rs7852496	1.00[ASN][1000 genomes]
rs9414733	1.00[ASN][1000 genomes]
rs9695086	1.00[ASN][1000 genomes]
rs9695196	1.00[ASN][1000 genomes]
rs9696222	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:58 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894442	chr9:139544437-140462099	Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	469 gene(s)	inside rSNPs	diseases
2	nsv894452	chr9:139598108-140523429	Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	450 gene(s)	inside rSNPs	diseases
3	nsv894455	chr9:139607966-140411547	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	417 gene(s)	inside rSNPs	diseases
4	nsv894463	chr9:139683224-140411547	Flanking Active TSS Bivalent/Poised TSS Weak transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	376 gene(s)	inside rSNPs	diseases
5	nsv524322	chr9:139690144-140376668	Genic enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	371 gene(s)	inside rSNPs	diseases
6	nsv894474	chr9:139694521-140432318	Genic enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	374 gene(s)	inside rSNPs	diseases
7	nsv894484	chr9:139709976-140382705	Flanking Active TSS Genic enhancers Enhancers Weak transcription Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	360 gene(s)	inside rSNPs	diseases
8	nsv894485	chr9:139709976-140408904	Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	363 gene(s)	inside rSNPs	diseases
9	nsv894486	chr9:139725120-140382705	Bivalent Enhancer Strong transcription Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	359 gene(s)	inside rSNPs	diseases
10	nsv894487	chr9:139725120-140449582	Enhancers Bivalent/Poised TSS Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	363 gene(s)	inside rSNPs	diseases
11	nsv894499	chr9:139810595-140734161	Weak transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	376 gene(s)	inside rSNPs	diseases
12	nsv894501	chr9:139823670-140400275	Genic enhancers Bivalent Enhancer Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	338 gene(s)	inside rSNPs	diseases
13	nsv894502	chr9:139823670-140487108	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	349 gene(s)	inside rSNPs	diseases
14	esv1823555	chr9:139834714-140362439	Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	336 gene(s)	inside rSNPs	diseases
15	nsv894522	chr9:139860631-140411547	Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	331 gene(s)	inside rSNPs	diseases
16	nsv894523	chr9:139860631-140462099	Bivalent/Poised TSS Flanking Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	332 gene(s)	inside rSNPs	diseases
17	nsv894556	chr9:139904037-140408904	Active TSS Weak transcription ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	310 gene(s)	inside rSNPs	diseases
18	nsv894562	chr9:139906359-140382705	Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	307 gene(s)	inside rSNPs	diseases
19	nsv894563	chr9:139906359-140408904	Active TSS ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Weak transcription Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	310 gene(s)	inside rSNPs	diseases
20	nsv894564	chr9:139906359-140432318	Active TSS Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	310 gene(s)	inside rSNPs	diseases
21	nsv894583	chr9:139950351-140382705	Flanking Active TSS Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	297 gene(s)	inside rSNPs	diseases
22	nsv894584	chr9:139950351-140400275	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	298 gene(s)	inside rSNPs	diseases
23	nsv894588	chr9:139963091-140372570	Flanking Active TSS Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	295 gene(s)	inside rSNPs	diseases
24	nsv894606	chr9:140018138-140368860	Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Strong transcription Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	274 gene(s)	inside rSNPs	diseases
25	nsv894607	chr9:140018138-140382705	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	274 gene(s)	inside rSNPs	diseases
26	nsv894608	chr9:140018138-140392494	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	274 gene(s)	inside rSNPs	diseases
27	nsv894609	chr9:140018138-140400275	Enhancers Flanking Active TSS Strong transcription Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	275 gene(s)	inside rSNPs	diseases
28	nsv894610	chr9:140018138-140408904	Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	277 gene(s)	inside rSNPs	diseases
29	nsv894626	chr9:140068342-140368860	Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	268 gene(s)	inside rSNPs	diseases
30	nsv894627	chr9:140068342-140382705	Genic enhancers Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	268 gene(s)	inside rSNPs	diseases
31	nsv894628	chr9:140068342-140400275	Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	269 gene(s)	inside rSNPs	diseases
32	nsv894638	chr9:140094605-140368860	Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	254 gene(s)	inside rSNPs	diseases
33	nsv531664	chr9:140110329-140725056	ZNF genes & repeats Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	275 gene(s)	inside rSNPs	diseases
34	nsv531654	chr9:140110329-141033187	Flanking Active TSS Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	281 gene(s)	inside rSNPs	diseases
35	esv1824250	chr9:140118448-140390615	Flanking Active TSS Bivalent Enhancer Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	230 gene(s)	inside rSNPs	diseases
36	nsv894645	chr9:140165584-140408904	Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
37	nsv1047563	chr9:140219047-140560852	Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	97 gene(s)	inside rSNPs	diseases
38	nsv540357	chr9:140219047-140560852	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	97 gene(s)	inside rSNPs	diseases
39	nsv531602	chr9:140240417-140535223	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	96 gene(s)	inside rSNPs	diseases
40	nsv932633	chr9:140240417-141053535	Enhancers Genic enhancers Strong transcription Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
41	nsv894654	chr9:140243547-140382705	Strong transcription Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	48 gene(s)	inside rSNPs	diseases
42	nsv894655	chr9:140243547-140392494	Strong transcription Enhancers Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	48 gene(s)	inside rSNPs	diseases
43	nsv1035524	chr9:140251014-140751633	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	99 gene(s)	inside rSNPs	diseases
44	nsv1053628	chr9:140260666-141005637	Active TSS Weak transcription Strong transcription Genic enhancers Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	105 gene(s)	inside rSNPs	diseases
45	nsv534215	chr9:140286134-141008915	Enhancers Flanking Active TSS Active TSS Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	105 gene(s)	inside rSNPs	n/a
46	nsv894659	chr9:140300156-140357972	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA	47 gene(s)	inside rSNPs	n/a
47	nsv894660	chr9:140301447-140411547	Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	n/a
48	nsv1035388	chr9:140306746-140654768	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	96 gene(s)	inside rSNPs	n/a
49	nsv894661	chr9:140316819-140366217	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA	46 gene(s)	inside rSNPs	n/a
50	nsv984561	chr9:140319247-140358257	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA	36 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:140347800-140354600	Enhancers	Fetal Brain Male	brain
2	chr9:140351400-140354400	Active TSS	Aorta	Aorta
3	chr9:140352400-140354000	Active TSS	iPS-15b Cell Line	embryonic stem cell
4	chr9:140352400-140354000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr9:140352400-140354000	Active TSS	Colon Smooth Muscle	Colon
6	chr9:140352400-140354200	Transcr. at gene 5' and 3'	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr9:140352400-140354200	Flanking Active TSS	Primary hematopoietic stem cells	blood
8	chr9:140352400-140354200	Active TSS	Pancreatic Islets	Pancreatic Islet
9	chr9:140352400-140354400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr9:140352600-140354000	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr9:140352600-140354000	Active TSS	HUES48 Cell Line	embryonic stem cell
12	chr9:140352600-140354000	Active TSS	Brain Anterior Caudate	brain
13	chr9:140352600-140354000	Active TSS	Brain Substantia Nigra	brain
14	chr9:140352600-140354000	Active TSS	HSMM	muscle
15	chr9:140352600-140354000	Active TSS	NHDF-Ad	bronchial
16	chr9:140352600-140354600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr9:140352800-140353800	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr9:140352800-140353800	Active TSS	NHLF	lung
19	chr9:140352800-140354000	Active TSS	Hela-S3	cervix
20	chr9:140352800-140354000	Active TSS	HSMMtube	muscle
21	chr9:140352800-140354000	Active TSS	Osteobl	bone
22	chr9:140352800-140354200	Active TSS	H9 Cell Line	embryonic stem cell
23	chr9:140352800-140354400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr9:140353000-140353800	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr9:140353000-140353800	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
26	chr9:140353000-140353800	Active TSS	Small Intestine	intestine
27	chr9:140353000-140354000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr9:140353000-140354000	Active TSS	HUES6 Cell Line	embryonic stem cell
29	chr9:140353000-140354000	Active TSS	iPS-20b Cell Line	embryonic stem cell
30	chr9:140353000-140354000	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr9:140353000-140354000	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr9:140353000-140354000	Active TSS	Primary T helper naive cells from peripheral blood	blood
33	chr9:140353000-140354000	Active TSS	Muscle Satellite Cultured Cells	--
34	chr9:140353000-140354000	Active TSS	Gastric	stomach
35	chr9:140353000-140354000	Active TSS	Right Atrium	heart
36	chr9:140353000-140354000	Active TSS	GM12878-XiMat	blood
37	chr9:140353000-140354000	Active TSS	NHEK	skin
38	chr9:140353000-140354200	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr9:140353000-140354200	Active TSS	Duodenum Smooth Muscle	Duodenum
40	chr9:140353000-140354600	Enhancers	Fetal Lung	lung
41	chr9:140353200-140353800	Active TSS	HUES64 Cell Line	embryonic stem cell
42	chr9:140353200-140353800	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr9:140353200-140353800	Active TSS	Fetal Muscle Leg	muscle
44	chr9:140353200-140353800	Active TSS	Fetal Thymus	thymus
45	chr9:140353200-140354000	Active TSS	H1 Cell Line	embryonic stem cell
46	chr9:140353200-140354000	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr9:140353200-140354000	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr9:140353200-140354000	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr9:140353200-140354000	Active TSS	Primary monocytes fromperipheralblood	blood
50	chr9:140353200-140354000	Active TSS	Primary T cells from cord blood	blood

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