Variant report

Variant	rs28628071
Chromosome Location	chr7:136641655-136641656
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10261540	1.00[AMR][1000 genomes]
rs11505751	1.00[AMR][1000 genomes]
rs13437975	1.00[AMR][1000 genomes]
rs28716163	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029192	chr7:136433278-137147566	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv831147	chr7:136583444-136755741	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	esv2753059	chr7:136633745-136893745	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:136638400-136642200	Enhancers	Placenta Amnion	Placenta Amnion
2	chr7:136640200-136642400	Enhancers	NH-A	brain
3	chr7:136640200-136643200	Enhancers	Osteobl	bone
4	chr7:136640400-136643000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr7:136641000-136641800	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr7:136641000-136641800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr7:136641000-136642000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr7:136641000-136642400	Enhancers	NHLF	lung
9	chr7:136641000-136643000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr7:136641000-136643000	Enhancers	Colon Smooth Muscle	Colon
11	chr7:136641200-136641800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr7:136641200-136642000	Flanking Active TSS	HUVEC	blood vessel
13	chr7:136641200-136644200	Enhancers	Fetal Heart	heart
14	chr7:136641400-136641800	Enhancers	HSMM	muscle
15	chr7:136641400-136641800	Enhancers	HSMMtube	muscle
16	chr7:136641400-136642000	Enhancers	Fetal Stomach	stomach
17	chr7:136641400-136642200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr7:136641400-136642200	Enhancers	Hela-S3	cervix
19	chr7:136641400-136642400	Enhancers	Stomach Smooth Muscle	stomach
20	chr7:136641400-136643000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr7:136641400-136643400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr7:136641400-136643600	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr7:136641400-136643600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr7:136641600-136642000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr7:136641600-136642000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr7:136641600-136642000	Enhancers	Primary monocytes fromperipheralblood	blood
27	chr7:136641600-136642000	Enhancers	Primary neutrophils fromperipheralblood	blood
28	chr7:136641600-136642000	Enhancers	Duodenum Smooth Muscle	Duodenum
29	chr7:136641600-136642000	Enhancers	Gastric	stomach
30	chr7:136641600-136642000	Enhancers	Left Ventricle	heart
31	chr7:136641600-136642000	Enhancers	Lung	lung
32	chr7:136641600-136642000	Enhancers	Pancreas	Pancrea
33	chr7:136641600-136642000	Enhancers	Right Atrium	heart
34	chr7:136641600-136642000	Enhancers	Right Ventricle	heart
35	chr7:136641600-136642200	Enhancers	Muscle Satellite Cultured Cells	--
36	chr7:136641600-136643000	Enhancers	Rectal Smooth Muscle	rectum
37	chr7:136641600-136643200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links