Variant report

Variant	rs28716163
Chromosome Location	chr7:136583107-136583108
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10261540	1.00[AMR][1000 genomes]
rs11505751	1.00[AMR][1000 genomes]
rs13437975	1.00[AMR][1000 genomes]
rs28628071	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029192	chr7:136433278-137147566	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:136558000-136609200	Weak transcription	Left Ventricle	heart
2	chr7:136578600-136584400	Weak transcription	Colon Smooth Muscle	Colon
3	chr7:136578800-136587200	Weak transcription	Stomach Smooth Muscle	stomach
4	chr7:136580600-136585400	Enhancers	Fetal Heart	heart
5	chr7:136581200-136583400	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr7:136581600-136584800	Weak transcription	Rectal Smooth Muscle	rectum
7	chr7:136582400-136586400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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